RNA id: TU7581


Basic Information

Item Value
RNA id TU7581
length 348
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G5619
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22822871 ~ 22824066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgcacccagccttagtgctgaagaaacttcactgaaaactcacccttagacaaaatattaaaaaatcaagcttactgtaaataaacggaagagcTTTATCCActcaaataaatagttttcaggtgaggaatctgtgtagattaacatccagtgctcatttgattTGAaagaagatgtttttttaagaattacagttttgtttactcaatCATAAAAATACAATAGGCTTCAGATGCCATTCTGTTTGTGTGTTCGCAAAAGACGTAAAAGTCAAATTCAGTAGGAGCGACTTTATAACCCCCTCCAGTGTTGGAACTGAATTGTGAGGTAATTTCTGTAACCCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7548 lncRNA upstream 115102 22707113 ~ 22707769 (+) True G5595
TU7339 lncRNA upstream 298125 22521606 ~ 22524746 (+) False LOC103043812
TU7342 lncRNA upstream 325969 22481707 ~ 22496902 (+) True LOC103043812
TU7351 lncRNA upstream 325969 22481707 ~ 22496902 (+) False LOC103043812
TU7346 lncRNA upstream 384853 22434783 ~ 22438018 (+) False LOC103043812
TU7587 lncRNA downstream 78700 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA downstream 78700 22902766 ~ 22917835 (+) False G5620
TU7604 lncRNA downstream 81072 22905138 ~ 22905655 (+) True G5628
TU7622 lncRNA downstream 125761 22949827 ~ 22951675 (+) True G5640
TU7629 lncRNA downstream 131994 22956060 ~ 22958499 (+) True G5642
XM_007248602.3 mRNA upstream 10255 22785074 ~ 22812616 (+) True c2cd3
XM_022669857.1 mRNA upstream 10255 22785074 ~ 22812616 (+) False c2cd3
XM_007248674.2 mRNA upstream 39222 22782092 ~ 22783649 (+) True tas2r4
XM_007248601.3 mRNA upstream 44566 22771799 ~ 22778305 (+) True rab38
XM_007248600.3 mRNA upstream 52221 22763337 ~ 22770650 (+) True ctsc
XM_007248605.2 mRNA downstream 11735 22835801 ~ 22838427 (+) True LOC103047689
XM_022671161.1 mRNA downstream 38312 22862378 ~ 22867050 (+) True LOC103021718
XM_007248607.3 mRNA downstream 56771 22880837 ~ 22893099 (+) True LOC103022249
XM_022669901.1 mRNA downstream 72248 22896314 ~ 22903817 (+) True LOC103042381
XM_022669898.1 mRNA downstream 80709 22904775 ~ 22909631 (+) True LOC103042688
XR_002649977.1 other upstream 64658 22708912 ~ 22758213 (+) False LOC103045948
XR_002649972.1 other upstream 148887 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other upstream 158035 22642610 ~ 22664836 (+) False LOC103041654
trnag-ucc_6 other upstream 231381 22591419 ~ 22591490 (+) True trnag-ucc_6
trnag-ucc_5 other upstream 232299 22590501 ~ 22590572 (+) True trnag-ucc_5
TU7588 other downstream 86957 22911023 ~ 22923081 (+) False G5620
TU7589 other downstream 86957 22911023 ~ 22923081 (+) False G5620
TU7634 other downstream 139994 22964060 ~ 22964924 (+) True G5646
TU7839 other downstream 488446 23312512 ~ 23351306 (+) False G5797
TU7837 other downstream 520430 23344496 ~ 23351046 (+) True G5797

Expression Profile