RNA id: TU7622


Basic Information

Item Value
RNA id TU7622
length 360
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G5640
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22949827 ~ 22951675 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGCCACATCGGTCAAATCAAAAACAATTATTAcagCTTGTGCTCCTCTGTAATATGTGGAAGCAATGCACTTGAACCTCTCTTGACCTGCAGTGtcccacAGCTGCAGGCTAAAAGGAACTCCAAGCACTTCAAACCTCTCCATCTCAAAGTCCACGCCGATGGTTGCTTTGTAATTTTTGTCAAACGCATCTTTACAGAAcCTATTAATCAGACACGTCTTCCCCACTGCCAGGTCACCAACCACAATAACCTTGGAGATTTTAAACCCTACTGTCCCAGTCCTCTGCTCCTGGCAGGCTGTCTTCACCTTGGTGTCAAACTCATCCTCTGTGTGTAAAGCAGCACCTTCATTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7587 lncRNA upstream 31754 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA upstream 31992 22902766 ~ 22917835 (+) False G5620
TU7604 lncRNA upstream 44172 22905138 ~ 22905655 (+) True G5628
TU7581 lncRNA upstream 125761 22822871 ~ 22824066 (+) True G5619
TU7548 lncRNA upstream 242058 22707113 ~ 22707769 (+) True G5595
TU7629 lncRNA downstream 4385 22956060 ~ 22958499 (+) True G5642
XR_002649989.1 lncRNA downstream 16316 22967991 ~ 22974947 (+) True LOC111192542
TU7645 lncRNA downstream 74467 23026142 ~ 23026556 (+) True G5657
TU7748 lncRNA downstream 125482 23077157 ~ 23077356 (+) True G5736
TU7752 lncRNA downstream 129716 23081391 ~ 23151806 (+) True LOC103024639
XM_007248610.3 mRNA upstream 3223 22940729 ~ 22946604 (+) True LOC103023064
XM_022669887.1 mRNA upstream 24311 22911025 ~ 22925516 (+) False LOC103021948
XM_022669890.1 mRNA upstream 24311 22918976 ~ 22925516 (+) True LOC103021948
XM_022669894.1 mRNA upstream 31987 22910951 ~ 22917840 (+) True LOC103043000
XM_022669898.1 mRNA upstream 40196 22904775 ~ 22909631 (+) True LOC103042688
XM_022669969.1 mRNA downstream 23845 22975520 ~ 22998282 (+) False nek8
XM_007248614.3 mRNA downstream 23846 22975521 ~ 22998282 (+) True nek8
XM_015605662.2 mRNA downstream 50176 23001851 ~ 23064522 (+) True traf4
XM_022671171.1 mRNA downstream 201633 23153308 ~ 23156366 (+) False LOC103024639
XM_022669983.1 mRNA downstream 206839 23158514 ~ 23177559 (+) True tada2a
TU7588 other upstream 26746 22911023 ~ 22923081 (+) False G5620
TU7589 other upstream 26746 22911023 ~ 22923081 (+) False G5620
XR_002649977.1 other upstream 191614 22708912 ~ 22758213 (+) False LOC103045948
XR_002649972.1 other upstream 275843 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other upstream 284991 22642610 ~ 22664836 (+) False LOC103041654
TU7634 other downstream 12385 22964060 ~ 22964924 (+) True G5646
TU7839 other downstream 360837 23312512 ~ 23351306 (+) False G5797
TU7837 other downstream 392821 23344496 ~ 23351046 (+) True G5797
TU7964 other downstream 880561 23832236 ~ 23833830 (+) True G5871
TU7890 other downstream 926477 23878152 ~ 23907474 (+) True LOC103022942

Expression Profile