RNA id: TU7634


Basic Information

Item Value
RNA id TU7634
length 820
RNA type TUCP
GC content 0.61
exon number 2
gene id G5646
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22964060 ~ 22964924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGTGACAGCCCATGGGCCCGTGAGCATCGCGTGCACCAGGGACACGCACAGGTTCCTCCACTTCCAGCAGCGGACCTCATCCAGCTGCACGGCTTTGGGGGCGGGCAGGCATCGCAGGAGGCGGTGGACCACCCTGAACATCAGAGAGAAGAGGAGCACGGAGAGGCCGGGGTTCCGCTGCAGAGCCAGCAGCAGCGTTCCCTCCATcatcttcttctcctccctctcttcctcctcttcttcctctccttCGCACTGGAACGGATCAGAGTGGGGGTCTCGGCGGTGTGCGCGGCTGTGATTGGCTCCTGGCTGTCACGCGTTCAGTCAGAGCAGTGGATGAAGAAGCTCCATGGCGCTggtgcagctgctgctgctgtttcagaTAAATCCATATGTTCCCCCGTATCTCCGCTCCTCCGCTGTTCTCCTATAACAGCGACCCCTGTCCCGCGCCTGCAGGGGTTTGGGGGTCCCAGCCCGTCCCCAGAGATTGATGCGCACCCGCGCGCTCGCGCCGGTCcgccacagacagacagagacacaccgCGTCCTCAGCCCGCGCGCATCGGCTCGTCTCCAGCCAGTGCCAGCCCGGGAATTTCACTCTGAATCCCGGACTCGGTTCATCCAAATCCCCCGGGTTCCGTCCTTCTCCTGCCCCTGCGGCTCCACTGCGGCTCCAGCACGCGGATAGAGGGATCAGGgataaagaggaggagagaaaagaggagaggagagaaccGCGACCACCTCCTCCAGAGCGAACTGTTCAATTATGAATCGGTTCCTTTCAGTATCAGTGTCGATTCATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7629 lncRNA upstream 5561 22956060 ~ 22958499 (+) True G5642
TU7622 lncRNA upstream 12385 22949827 ~ 22951675 (+) True G5640
TU7587 lncRNA upstream 45987 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA upstream 46225 22902766 ~ 22917835 (+) False G5620
TU7604 lncRNA upstream 58405 22905138 ~ 22905655 (+) True G5628
XR_002649989.1 lncRNA downstream 3067 22967991 ~ 22974947 (+) True LOC111192542
TU7645 lncRNA downstream 61218 23026142 ~ 23026556 (+) True G5657
TU7748 lncRNA downstream 112233 23077157 ~ 23077356 (+) True G5736
TU7752 lncRNA downstream 116467 23081391 ~ 23151806 (+) True LOC103024639
TU7750 lncRNA downstream 182413 23147337 ~ 23156313 (+) False LOC103024639
XM_007248610.3 mRNA upstream 17456 22940729 ~ 22946604 (+) True LOC103023064
XM_022669887.1 mRNA upstream 38544 22911025 ~ 22925516 (+) False LOC103021948
XM_022669890.1 mRNA upstream 38544 22918976 ~ 22925516 (+) True LOC103021948
XM_022669894.1 mRNA upstream 46220 22910951 ~ 22917840 (+) True LOC103043000
XM_022669898.1 mRNA upstream 54429 22904775 ~ 22909631 (+) True LOC103042688
XM_022669969.1 mRNA downstream 10596 22975520 ~ 22998282 (+) False nek8
XM_007248614.3 mRNA downstream 10597 22975521 ~ 22998282 (+) True nek8
XM_015605662.2 mRNA downstream 36927 23001851 ~ 23064522 (+) True traf4
XM_022671171.1 mRNA downstream 188384 23153308 ~ 23156366 (+) False LOC103024639
XM_022669983.1 mRNA downstream 193590 23158514 ~ 23177559 (+) True tada2a
TU7588 other upstream 40979 22911023 ~ 22923081 (+) False G5620
TU7589 other upstream 40979 22911023 ~ 22923081 (+) False G5620
XR_002649977.1 other upstream 205847 22708912 ~ 22758213 (+) False LOC103045948
XR_002649972.1 other upstream 290076 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other upstream 299224 22642610 ~ 22664836 (+) False LOC103041654
TU7839 other downstream 347588 23312512 ~ 23351306 (+) False G5797
TU7837 other downstream 379572 23344496 ~ 23351046 (+) True G5797
TU7964 other downstream 867312 23832236 ~ 23833830 (+) True G5871
TU7890 other downstream 913228 23878152 ~ 23907474 (+) True LOC103022942
XR_002650083.1 other downstream 2447270 25412194 ~ 25428351 (+) False LOC103027586

Expression Profile