RNA id: TU7789


Basic Information

Item Value
RNA id TU7789
length 1653
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G5762
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23213691 ~ 23215367 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTTACAAACTGAATTTTTAGTGCAAATAATTGCACTCACTTTGTCAAATAACCCAATTTGAAAACACTCTGGGCTACATCACTGCACACTGTAAAGTGCATATAACTGTGTCTAACTGCTATCTACTATCAAACAGACCTGCAACAAGTCACCTGACACCTTATAAGGTACTTAAATTGAAGAACCATTTTTAATtccaaagaaataaaaaacattttggttagagataaattatcatatattaaattatacaaaCATTTTCATTGTCAACTGCTTACACTTCTATACgtgaaaaaaaactcaattatATTTATGCCCATTTATGTTGCCCATTCCTGAAGACACATCCTAAAAGGCAGATGCAGCAGGGTGATGATGATGTTGTAGACCCTCTCCTTATCCAGCAGCTACCCAACTGTGGTCAGCCCCTTTTCCAGCAACCCCACATAAAGGTACCTGAAAGGCTCATTTATACTCtctttaaatacaaaatgaatgtcTGTTTCAACAGCAAATGCCCACATACTTCAATGTGTCCTGTACTTTGGCAtgaattcaatgttttttgcaggttttcatttaaatttgcCCTTTTTTCATCTCCATTTAATAAGtgcaaaagtaaaaattaacaTAAACCTGCCGTTTCTTGGCTTGCCCTGTCAGCTCCATACCTCACTGTTGGCTAAGTTTACAAGAAACACTGAATCACAATCTCACAATCTCAAACAGACTAGCCTcagctttttttattacttattctgataaacatgaaaaatgcttttttttgccaatttgtttttagacaaatatttttggcTGCCAATTATTCGGTGCATCCCTAGCTTAGAATCAggtttctgagaaaaataacaaacatggCAACCGTGGAGGAGGTTGTGATGATGTACTTACTATAAAAGTTACCAAAGAGGCAGCAAGGATGTAAACTGctttgaatgtttaaaaaaatgttctatcaaagctatgattgggagattgctggttcaaatcccagttatgcagcttgccatcagctgctgtaTACTCTACCGACACGATTTCCAATATTTGTCTTTATGAAGTTTTCATAGAACAGCCACTAATATGGATGAAATGGTCACAGAAGGCTGCGTTCTTTTCCATATTGTATTTAACCTGAGCATAAATGAGCCCTTCCGCAGCTCCGTTGGCCCCCAGCCATGCCCTCCGCTCCTCTAATACAACAAAACACCACTGATCCCGAACTGCTGACCCCACGCTGTCGCACCCTCTTTTGAAAAGAAGCGTGTTTCAAACAGCTCTGATTTCATTATCCTCTGAATCGCTGCCAGTCCTGTTCccaaatatgtaattaaaaacggTGGAATCATTAATCAGGTGTCGGGAGCAGCCTGAAACAACTCTATCAATCAGCAGCTGGTTGGATGCGTTCAGCTGCTCGCTTAGCACCTGTGTTTTGCGGATGGGTGACGGATGATTAAGGTGCATCTGCTCTTCCACCACTACAGCTCTGAACGTTTCTACACCTCCTTCATCCGTCCGATGAAGTCTAACCTGCAGTCTAAAAAACTAATatctaatgccaggttcacactacaccacTTTGAGTTGTGCTGTAATTACGGgtccttcagttgttgagacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7750 lncRNA upstream 57378 23147337 ~ 23156313 (+) False LOC103024639
TU7752 lncRNA upstream 61885 23081391 ~ 23151806 (+) True LOC103024639
TU7748 lncRNA upstream 136335 23077157 ~ 23077356 (+) True G5736
TU7645 lncRNA upstream 187135 23026142 ~ 23026556 (+) True G5657
XR_002649989.1 lncRNA upstream 238744 22967991 ~ 22974947 (+) True LOC111192542
TU7798 lncRNA downstream 30765 23246132 ~ 23248019 (+) True G5768
TU7845 lncRNA downstream 119749 23335116 ~ 23339774 (+) True G5801
TU7847 lncRNA downstream 119749 23335116 ~ 23339003 (+) False G5801
TU7840 lncRNA downstream 135351 23350718 ~ 23351306 (+) False G5797
TU7851 lncRNA downstream 137370 23352737 ~ 23354154 (+) True G5804
XM_015605646.2 mRNA upstream 11674 23191090 ~ 23202017 (+) True dusp14
XM_007248617.3 mRNA upstream 11674 23192689 ~ 23202017 (+) False dusp14
XM_022669983.1 mRNA upstream 36132 23158514 ~ 23177559 (+) True tada2a
XM_022671171.1 mRNA upstream 57325 23153308 ~ 23156366 (+) False LOC103024639
XM_015605662.2 mRNA upstream 149169 23001851 ~ 23064522 (+) True traf4
XM_007248642.3 mRNA downstream 201772 23417139 ~ 23421491 (+) True mrm3
XM_007248646.3 mRNA downstream 316483 23531850 ~ 23544221 (+) True LOC103033181
XM_007248649.3 mRNA downstream 348981 23564348 ~ 23580240 (+) True LOC103034256
XM_007248648.3 mRNA downstream 385051 23600418 ~ 23620855 (+) True LOC103033930
XM_022670335.1 mRNA downstream 627034 23842401 ~ 23845680 (+) False LOC103035426
TU7634 other upstream 248767 22964060 ~ 22964924 (+) True G5646
TU7588 other upstream 290610 22911023 ~ 22923081 (+) False G5620
TU7589 other upstream 290610 22911023 ~ 22923081 (+) False G5620
XR_002649977.1 other upstream 455478 22708912 ~ 22758213 (+) False LOC103045948
XR_002649973.1 other upstream 548855 22642610 ~ 22664836 (+) False LOC103041654
TU7839 other downstream 97145 23312512 ~ 23351306 (+) False G5797
TU7837 other downstream 129129 23344496 ~ 23351046 (+) True G5797
TU7964 other downstream 616869 23832236 ~ 23833830 (+) True G5871
TU7890 other downstream 662785 23878152 ~ 23907474 (+) True LOC103022942
XR_002650083.1 other downstream 2196827 25412194 ~ 25428351 (+) False LOC103027586

Expression Profile