RNA id: TU7891


Basic Information

Item Value
RNA id TU7891
length 2936
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC103022942
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23876999 ~ 23907474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagttttaaaattttGGTATGCTTTAGCTGtctttttacctttattttagcgtttcatttatttatttattttatttttttatacagcgAGGTAAACATTTTGAAGTGCTCTAAAGTCTGGCTCTACTTCTAAACATTTATCCacactttattttattcaaaatgtcGACACACTCTTGCTGTGTGAAGtcttttaagtgctctctcgctcactcactcactctgtccCTATtcgtctctctcttgctctttctatctctctaacttctctcaaactctctctgtctctctctcgctcactcacccactcactctcactctctccctttctcttgctctgtctatctttcgctctgtctctctctcactctctctctctatcctgaGATGGTGCAATATAGTAAAATAGACTCTGACGGATCTAAACCACACGACATTTATATTAATGTCCCCTCACAATAATGCAGAAATACCAGCATTTAACAAAAAAGGTATCATGATTAtaagtcatttttaaatgtattaattatattaaatataatttatcattATATATCATGTTCAATCTAATGCTCAATCTAATGAttcttttgttttacatttaaatgcccATCAGTAAACGATTAAGAAATATGTGAAACGTTTGATATTTGcactcaagtaaaaaaaaatgccttaaatataCAGTTTCCATTAAACTATTCAGCAACCAATTATTAACCTTTAAGAAGTGAGcgttttatgttcatttttcttaaaaGTAATAAGAACTCTTGAAATCTGAACTGCATCCAGCAGTATGtttaggaaaatatatatagtttaaacagtataagtaaagctgctgtttttgcttttattaaagcgacacaaacaagaaaaatgatcaatgttttgtttaattccaacaagatctaaataaaaagagaataagatTACTCATCATGTCGGCtgtgaaataaatacattgtgtaagaataattatcttatcatataataataatgataataatttgGTTACAATTAAGATCGGTATCAAATTTAAAGTATAGTATTGATATTGAACGTATTAGaccgatacccagccctacgcatatgtgtgtgtgtgtgtgtgtatgtccgGGTGGCACACTGCACTTGGCAGGACCATGGCTGTGGGGTCACAGAGTTGAAGGGTATTTCTCCACACTGAGTGAATGAAGAGAAAGCTAAGGCGATCAGCCCAAATCCAGCCGAGTGCGGCTACTGCCAGCTCGGCCAATGAGGAAGGGTCTCTGAATGGGCCTCTGATGAACCGACCAATGAAGGAGGCCCATATGAGGGGCTAAACCAATCCAAGATGGCAGAGAGACGCCTTGCCACTGTCCCGACGCCGACATCGCTCCTCCATCGTGAATGAAAAGCGCTCCCTTGCCCTTACGTACTTTAGCGAATGTTAGCCTGTGTATGTAGCCGGTTACCTGGTGTTGTACCTGGACCTGCCCTATAGTCTGTGTTCAGTGTTCGCCATTTGTGCTGCTCCTGCTCTCACTGTGTAATCAACCATACCGTCTTTATAGAGATGACCTTAAACGAGTACTCCAATATTTTTAACCTCTGTCTGCTTCATCTGTAGCGTACGGTTCATTACCACACTAGCAGGGGTGTGATAAGATCTCGTGCCACGAAATCCTGCGAGATTTTTCTTGtcaaggtgttaaatgtgtctcGTATGATTATGCACAGGTAAAACAGCAGCCCAAATTAATTACtcgattattttagtcagcaatataataatgttttttttttttttttaataacttttttttttttttttttttttggtcaattaCCCACCccgctcattaggactccccctatcactagtaattcccacaccaggagggtgaagactaacacatgtgcacctccaatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgctgcattgccgagcagccagtgcactcgaaggaaagcgcagcgactcgcccccgatacatcagctcacagacgccctgtgctgtggacatcaacCTAGGAGTGAtttggggagagagcaccatctacccacccagagggagcagggccaattgtgctccctctgagcgccggcagcttgatggcaaagctgcatgagaggggggtttgaacctgcgacctcacgctcatagtggcagggctttagaccgctggaccactcggcgccccaatATGATAATGTTTGATACCTCAAAATAAGTCATGATACAGTTCGATACGATCCAATTTGATACGATTCAGTTCGATACTGGATTTGCACTGGATCTGTATATACAAGCAGCTTTAGAGTTACTAGAGTTTAATCTCCACAGTAAAGAAAgtctttcagtgtttttctctgaaAGAATTTTCTTTAGCAAAATCAGCTGATCAACTTATTCAGGAGACAGAGCCCTGCTCTCAGAACCTACAGCTCCACCTGCTGGCGCAAGCATGTGCTTggcaaacagcagcagcatagCACAGAGAGAAATTATGCTAATAATGTTTAAACATATTTGTGTCACATTTAAAGCATTAGATCGTTTGAGCCTTGCGTTTCCGCTCACACCTTCCGCATTCACATTTAAACCACGAGCAATGCTAAAGCACGGACACATGCAGAGGCAGTGTGTAGAGATTCAGTCATAGGTTGCCAAGTCTGGATAGAACCCTCAAGACGGATTGCCAGTTGAATACAGAACCCTCACTGGGGGGATTGTGAAGATTGTGAAGTTCTGAAGGTCTGATAATCATACAGGAAAGAAGTTATTGGGTTTGCAGAACAGTTCTTACatactgttctgtattttactgcatatgataAATCGCACAATTCAAAATCAGAGTAAACGTCAACTGACATCTATTATAAgttgattatgattattaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7966 lncRNA upstream 29632 23839993 ~ 23847367 (+) True LOC103035426
XR_002650056.1 lncRNA upstream 48516 23827210 ~ 23828483 (+) True LOC103043618
TU7949 lncRNA upstream 52928 23784094 ~ 23824071 (+) True G5861
TU7946 lncRNA upstream 103632 23746959 ~ 23773367 (+) True G5858
TU7928 lncRNA upstream 239803 23582369 ~ 23637196 (+) True G5845
TU7894 lncRNA downstream 8597 23916071 ~ 23918384 (+) True G5830
TU7993 lncRNA downstream 20107 23927581 ~ 23930231 (+) True G5892
TU7994 lncRNA downstream 25176 23932650 ~ 23934352 (+) True G5893
TU7997 lncRNA downstream 29778 23937252 ~ 24033261 (+) False G5895
TU8013 lncRNA downstream 115462 24022936 ~ 24023904 (+) True G5905
XM_022670357.1 mRNA upstream 1507 23860045 ~ 23875492 (+) True gdpd1
XM_022670335.1 mRNA upstream 31319 23842401 ~ 23845680 (+) False LOC103035426
XM_007248653.3 mRNA upstream 31319 23842918 ~ 23845680 (+) False LOC103035426
XM_007248648.3 mRNA upstream 256144 23600418 ~ 23620855 (+) True LOC103033930
XM_007248649.3 mRNA upstream 296759 23564348 ~ 23580240 (+) True LOC103034256
XM_007239739.2 mRNA downstream 74043 23981517 ~ 23996273 (+) True clptm1
XM_007239738.3 mRNA downstream 94656 24002130 ~ 24010615 (+) False LOC103021374
XM_022670387.1 mRNA downstream 96995 24004469 ~ 24010615 (+) True LOC103021374
XM_022670271.1 mRNA downstream 105171 24012645 ~ 24038337 (+) True atg16l1
XM_022670287.1 mRNA downstream 105171 24012645 ~ 24038337 (+) False atg16l1
TU7964 other upstream 43169 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 525693 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 525953 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 912075 22964060 ~ 22964924 (+) True G5646
TU7589 other upstream 953918 22911023 ~ 22923081 (+) False G5620
XR_002650083.1 other downstream 1504720 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 2132682 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 2132682 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 2135585 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 3011817 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile