RNA id: TU7997


Basic Information

Item Value
RNA id TU7997
length 414
lncRNA type read_through
GC content 0.50
exon number 2
gene id G5895
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23937252 ~ 24033261 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaaTGGTCAGTGATGTGATGTAAAAGGTCTGAAGCCTGACTCTCCGCCCACTTCCTGTGCTCCTCCCAGCAGCCCCTGCTGTTACTCCAGTATACTCTAGGTGTGTATCACTGGTTCGCGGGGCGGCTGATATTTAAGTGGCTGTGCTGggtgtgtgtttctgagagCAACAAGTCTCACACAcagtgcagcacacacacacacacacacacacaggaggatGGAGGTGTGGAAATGTTAGGCTATTGATCTGAACCTCATACTGAGACCTAAAATCCTCACCATGTGGTTGGCGCTGGATGTTGATGGCCCTGGATGTTGATGGCGCTGGGTGTTGATGGCGCTGGGTTTCAGGGGAGTGGGATGTGGGCGGTGCTGAATGTGGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7994 lncRNA upstream 2900 23932650 ~ 23934352 (+) True G5893
TU7993 lncRNA upstream 7021 23927581 ~ 23930231 (+) True G5892
TU7894 lncRNA upstream 18868 23916071 ~ 23918384 (+) True G5830
TU7891 lncRNA upstream 29778 23876999 ~ 23907474 (+) False LOC103022942
TU7966 lncRNA upstream 89885 23839993 ~ 23847367 (+) True LOC103035426
TU8028 lncRNA downstream 47377 24080638 ~ 24081361 (+) True G5913
TU8006 lncRNA downstream 55390 24088651 ~ 24090482 (+) True G5898
TU8215 lncRNA downstream 74703 24107964 ~ 24108997 (+) True G6049
TU8218 lncRNA downstream 81686 24114947 ~ 24125362 (+) True G6051
XR_002650063.1 lncRNA downstream 219894 24253155 ~ 24253912 (+) True LOC111192653
XM_022670399.1 mRNA upstream 32537 23878121 ~ 23904715 (+) False LOC103022942
XM_022670357.1 mRNA upstream 61760 23860045 ~ 23875492 (+) True gdpd1
XM_022670335.1 mRNA upstream 91572 23842401 ~ 23845680 (+) False LOC103035426
XM_007248653.3 mRNA upstream 91572 23842918 ~ 23845680 (+) False LOC103035426
XM_007248648.3 mRNA upstream 316397 23600418 ~ 23620855 (+) True LOC103033930
XM_022670317.1 mRNA downstream 11136 24044397 ~ 24056710 (+) True LOC111192623
XM_022670326.1 mRNA downstream 11145 24044406 ~ 24056710 (+) False LOC111192623
XM_022670215.1 mRNA downstream 31418 24064679 ~ 24087802 (+) False dgkd
XM_022670223.1 mRNA downstream 31418 24064679 ~ 24087802 (+) False dgkd
XM_022670220.1 mRNA downstream 34082 24067343 ~ 24087802 (+) True dgkd
TU7890 other upstream 29778 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 103422 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 585946 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 586206 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 972328 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1378933 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 2006895 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 2006895 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 2009798 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2886030 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile