RNA id: TU8006


Basic Information

Item Value
RNA id TU8006
length 1832
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G5898
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24088651 ~ 24090482 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTTAAGAAACTTGAAAgaaaaactgacattttaacactattttttgctatatatattgcaatactaaAGTGAAATGCATCACTTTTCACCAATCTAATGTACCATACAATTTCTCCAGTTCCTACCAATTGCACATTGCAACATTGCAATGCTGATGGATGCTGAAAGGTTATCTTGTGCAGCTCTAATATGAATCACCTCATCACAGCAGTCTTAATCAAACACAGAGAATCAGGACTAGTGCTGAAGTCAGGAATAGATGGTGGGTTAAAATCAGGGATTTGTCCAGTTAAGATGGCTCAGATTTAGATTTAAGGCTGGGAATACACTGTGATATTTACAATGGGTAtgttcagctccagctcaaacTGTACGACTAAGTCTCAGGGTTAAAGTTCACTATACGGCGCAATGCCGAACACAACATGCCTGACTCTCGTATCCGGAACTGCAgcgtaaaaaaaagaagagtcaAGTAATCTTTATTTCTGTAGCACATTTAAAAGATAAGTGTCAACCAATATGCTGTACAATAAGGTAAAATAACACTAACCTAAtttgaaataacacaaaaactaaacagaaaaaaaaaaacattaaaattgctaacaattttttttatgaaaaatctTGATGACAAGACATAGTAGACCAAGAAAAAACAGACGTCTAACAGTATAATCAGCTCAGGACTCAAATACCAGATTGAATCTTGTTGTATTCCTTTATAAAAAGTGAAAGATTATTTCACAGTTTTGGATCAGTTACAGAACAGGCCTGATAGCCTTTGAATTTCAGCCGAAAGCGAGGAACATCTAAACAAGACTGGTTAGAGGAGGATTAAAACATGATGGATCGAGCGAAGGTGAAGGAGGTCAGAAATGTATCTCAGAGCTAAGTCATTAAGAgcttaacaaacaaacaaaaaaaaaactaaaattacacCCTTATTTCACTGGAAGCCAGTGAAGCCAATACAGGGGAGATACTTTCCCTTCTCTGAGTCTCAGTCAGGACCCAGGCAGATGCAGACGTGAGAAAAAGAAGTAGAAGAATCGGGGTAGTGGGTAGATGCTCAAACAAAGGGCTGCCTTGGCAAAATGTGCCATTCTCTGCAGAGTGAAATTCGGCCAAAAATCGTCATAATCTAGAATGAGCATTGATGTATGGTATAGTACAGTGTAGGAACACACAGACGCCCTGCACACACCATCTCATCTGATATTTAGCTGAACACATACCAAACCCCTCACACATTCCCCTGTGGAAATCCCTAAATGTATTGAATTCCCACACTGATCTGTAAACATCAGTATTATTACTGAATTAAAGCGAGGTTTGAACTGAAGCTCAGGACTATACAGCTGTTCCACTCAGTTACACTGTACAGCCTGGGCTGCTTCTCACACCCTTATCAACTGccactgtgagtgtgtgagagagtgtgtgtatgagtgatagagaatgtgagtgtgagtgtttgtgaatGTAAGAAAGTGTGTGAGTTAAAAGAGTGTACGTTTGTAAGAGTGTAAGAAAGAGTGTGCATGAGTTAGAAAGAAagcttgtatgtgtgtgtgagtgagaaagagcatGAGTGTGAGTTAGAAAGAAAGAGTGCGAGTGTGTGATAGGTCATATCATTTGGTTGTGGATTCTGCCAGCAGTGTCCGTACTCTCTGcctgttaaatatttataataagttATAACTGAATTGATGCTGTCTGTGTCTGatctgtgttgtgtgtaaatagGCTGAATCTAGGACTGTAAATACATTGTTAATGTACAGTGAATTGTTCTGGATTAAACAATGCTCTGTGTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8028 lncRNA upstream 7290 24080638 ~ 24081361 (+) True G5913
TU7997 lncRNA upstream 55390 23937252 ~ 24033261 (+) False G5895
TU8215 lncRNA downstream 17482 24107964 ~ 24108997 (+) True G6049
TU8218 lncRNA downstream 24465 24114947 ~ 24125362 (+) True G6051
XR_002650063.1 lncRNA downstream 162673 24253155 ~ 24253912 (+) True LOC111192653
TU8265 lncRNA downstream 181068 24271550 ~ 24276459 (+) True LOC111192656
XR_002650065.1 lncRNA downstream 184010 24274492 ~ 24279468 (+) False LOC111192656
XM_022670215.1 mRNA upstream 849 24064679 ~ 24087802 (+) False dgkd
XM_022670223.1 mRNA upstream 849 24064679 ~ 24087802 (+) False dgkd
XM_022670220.1 mRNA upstream 849 24067343 ~ 24087802 (+) True dgkd
XM_022670227.1 mRNA upstream 849 24071797 ~ 24087802 (+) False dgkd
XM_022670317.1 mRNA upstream 31941 24044397 ~ 24056710 (+) True LOC111192623
XM_007237904.3 mRNA downstream 3794 24094276 ~ 24101233 (+) True ilkap
XM_015602648.2 mRNA downstream 3795 24094277 ~ 24101233 (+) False ilkap
XM_022670253.1 mRNA downstream 12076 24102558 ~ 24120298 (+) True LOC103047855
XM_022670255.1 mRNA downstream 12076 24102558 ~ 24116055 (+) False LOC103047855
XM_022670232.1 mRNA downstream 38802 24129284 ~ 24148571 (+) True LOC103042016
TU7890 other upstream 181177 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 254821 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 737345 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 737605 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1123727 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1321712 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1949674 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1949674 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1952577 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2828809 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile