RNA id: TU8014


Basic Information

Item Value
RNA id TU8014
length 349
lncRNA type intronic
GC content 0.48
exon number 2
gene id G5906
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24023958 ~ 24024430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtgtgtctgtccctgtgtgtgtgtgtctctgtttgagtgTGTCTCTGTGTCAGTATGTCTCTGTGTGAATGcgtctgtgtgtttgtctctgtgtgagtgtctctgtgtgtgaatTACTATGTtgctgtctctgtgtgagtacgtttctgtgtttctctgtctgtgtgtctctgtgtgtgaatCTCTGTCTTTGTGTCAGTATGTCTCTGTGTTTGTATGTCTCTGTGTTTGTATGTCTCTGTGTCAGTATGTCTCTGTGTCAGTATGTCTCTGTGTCAGTATGTCTCTGTGTCAGTATgtctttgtgtgaatgtgtctgtgtgtttgtctctgtgtgtaaATTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8013 lncRNA upstream 54 24022936 ~ 24023904 (+) True G5905
TU7994 lncRNA upstream 89606 23932650 ~ 23934352 (+) True G5893
TU7993 lncRNA upstream 93727 23927581 ~ 23930231 (+) True G5892
TU7894 lncRNA upstream 105574 23916071 ~ 23918384 (+) True G5830
TU7891 lncRNA upstream 116484 23876999 ~ 23907474 (+) False LOC103022942
TU8020 lncRNA downstream 4223 24028653 ~ 24029069 (+) True G5908
TU8003 lncRNA downstream 6648 24031078 ~ 24033261 (+) True G5895
TU8028 lncRNA downstream 56208 24080638 ~ 24081361 (+) True G5913
TU8006 lncRNA downstream 64221 24088651 ~ 24090482 (+) True G5898
TU8215 lncRNA downstream 83534 24107964 ~ 24108997 (+) True G6049
XM_007239738.3 mRNA upstream 13343 24002130 ~ 24010615 (+) False LOC103021374
XM_022670387.1 mRNA upstream 13343 24004469 ~ 24010615 (+) True LOC103021374
XM_007239739.2 mRNA upstream 27685 23981517 ~ 23996273 (+) True clptm1
XM_022670399.1 mRNA upstream 119243 23878121 ~ 23904715 (+) False LOC103022942
XM_022670357.1 mRNA upstream 148466 23860045 ~ 23875492 (+) True gdpd1
XM_022670317.1 mRNA downstream 19967 24044397 ~ 24056710 (+) True LOC111192623
XM_022670326.1 mRNA downstream 19976 24044406 ~ 24056710 (+) False LOC111192623
XM_022670215.1 mRNA downstream 40249 24064679 ~ 24087802 (+) False dgkd
XM_022670223.1 mRNA downstream 40249 24064679 ~ 24087802 (+) False dgkd
XM_022670220.1 mRNA downstream 42913 24067343 ~ 24087802 (+) True dgkd
TU7890 other upstream 116484 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 190128 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 672652 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 672912 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1059034 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1387764 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 2015726 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 2015726 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 2018629 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2894861 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile