RNA id: TU8218


Basic Information

Item Value
RNA id TU8218
length 1548
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G6051
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24114947 ~ 24125362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgctgagaagtgttggatacgtccagGTAGCTGCACTGATAAAATAGCagtccgccaaagtcagagtacacctggctcttaaaggaaatggcaagtgacgcgcttattggtttatttcacgttacacctaaaacacacctttgattaattaagagaattagtacatgccttttgtgacTTTCGAGCTACagaaggtgtacttttcccgtggtTACttaagcaaagacacactgacactgacGATATGTTTTCAGTTGACTGAGACTCCTGCTGTGAACATTTAAACtctgaaatattgaaataatgcTACTAAAACTACTATTATGAACTAATAAACCTATTTTTGATACATGTCTGAGATTCTGGCCACCTGCTATGGGCTGtaatacctgtttttttttaactacagaTACCTTCCATGCAGTGTTATACTTATATACGAACTGTTAAATTAGATGTTACAAGACTCCACCCACCTTACATTGTTTATTGTTCTATTAAATGTTTAGACCCCGCCCACCTGCCATGGACTCCCGCCCTGTCGCTGCAGCTGACCTCCTACAATCCGCTTCCCGGAGTCATCCGAGCCATCATCTCCAGAGTAAGAGGCATTCTCCCGGTGGGTGTGGTTAGAGGGGAGGTGGGTGTGGTTTGAGATGAGGTGGGTGTGGTTTGAGAAGGTGTGGCTGTCTGTGTCGGTTAAATCGTCCAGTAGGGAGCGGTGTAGAGAGCCGTGACTCCACTGTTTTCCACAGGGGAACTGGGCTaagattaataaacacaatcatagaggtttgtttatgtttttgtttacagtatatgtttatttgtttatgatgAGCACCTGTCTCTCGGCAGCTCTTCCCGTCATCTTCCAGTTCGTATCCCTCCGCACAGCTACAtgtgacttttttttcattggggGCGGAGTTACTGCAGTAGTGTAAACAACCTCCATTCTTGTACTGGCAGTCAAACACCTCTGtaggacacaaacacacaataacaGTGATAACAGTAAATCAGTACTGAAATTATGTTCATGTACGTTATTTACTTCAAAATTCTGATATCCAGGGCCCAATTTTAGCTTTATCTAGAGGCGAGCCATTAACCGCGCACAGTGCagttggatttagggcgtgtcggtgtgtctttgctatcgtaacgtcgggaaaagtacaccttgcttggCTCAAAACAACGCAAAACaaatcatggatgtgttttgggtgcAACGTGACATAAACCATCATGATGCACTCGGACTGTCAGACAGATTAGTACCTGTTTCACAGTGTGATCCAATGAATCGCGGtgggcaaacacacacataacctctCTGGTCAGAACTGCATATTCCCCCGTTTACACACGGGTTATCCTGACACCTCTTGGAACCTGGAGAAACATCACAATCTACTGAGTTTCCACCTTCTGACACCATGGTGTGGTGGACCTAATGGTGCTTGTCGCCCTGTATTGCTCTGTAGTAAAAGTCACTGTTAACAGCCAATAATTTGATTTAGTACTGCTTTAAAAATTGCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8215 lncRNA upstream 5950 24107964 ~ 24108997 (+) True G6049
TU8006 lncRNA upstream 24465 24088651 ~ 24090482 (+) True G5898
TU8028 lncRNA upstream 33586 24080638 ~ 24081361 (+) True G5913
TU8003 lncRNA upstream 81686 24031078 ~ 24033261 (+) True G5895
TU8020 lncRNA upstream 85878 24028653 ~ 24029069 (+) True G5908
XR_002650063.1 lncRNA downstream 127793 24253155 ~ 24253912 (+) True LOC111192653
TU8265 lncRNA downstream 146188 24271550 ~ 24276459 (+) True LOC111192656
XR_002650065.1 lncRNA downstream 149130 24274492 ~ 24279468 (+) False LOC111192656
TU8259 lncRNA downstream 151205 24276567 ~ 24279467 (+) False LOC111192656
TU8404 lncRNA downstream 259073 24384435 ~ 24384926 (+) True G6167
XM_007237904.3 mRNA upstream 13714 24094276 ~ 24101233 (+) True ilkap
XM_015602648.2 mRNA upstream 13714 24094277 ~ 24101233 (+) False ilkap
XM_022670223.1 mRNA upstream 27145 24064679 ~ 24087802 (+) False dgkd
XM_022670232.1 mRNA downstream 3922 24129284 ~ 24148571 (+) True LOC103042016
XM_022670236.1 mRNA downstream 13670 24139032 ~ 24148571 (+) False LOC103042016
XM_022670393.1 mRNA downstream 30277 24155639 ~ 24156948 (+) True LOC103043883
XM_022670361.1 mRNA downstream 32233 24157595 ~ 24161442 (+) True LOC111192631
XM_015602650.2 mRNA downstream 41115 24166477 ~ 24170637 (+) True LOC107196838
TU7890 other upstream 207473 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 281117 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 763641 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 763901 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1150023 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1286832 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1914794 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1914794 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1917697 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2793929 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile