RNA id: TU8435


Basic Information

Item Value
RNA id TU8435
length 1194
lncRNA type read_through
GC content 0.45
exon number 4
gene id G6190
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24435596 ~ 24456708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcttcttattattattattattattattattattattccgcGCTCAAAATTTAATCACTATCTCCTCCTAGGGCTTTTGACGTAGAACCACGAAACTTTGCAGTATCGTAGGACCTATACCCGAATaggttgcttgtgcttttttaaGCGATACAtcgtacggttttcgtaaaaacttcgtaaacgtacgcttttttttcccataggaaatgaatgggggACAACTTTGAACGTTTGTGTAGGTAACAATTTTTGACATACAAAGACAAAAATCGGACGGTCTATAGAACTTACCGCGTTCTTTCCGAAAATTTTAACGTTTCGACGATACGTCGTACGGTTTTCGTACAAATGTCGTACGAAGTTTTCCCATTgaaatgaatggggggcccagagttccatctcacacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcaccccagccagggcttagcaaccaccttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccacctggaaaacgttagaaacagcctagcaacagcttagcaaccacattagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgtaaGCAACTGTTTAGCAACCgccttgcaaccacttagcaaccatgtgtaagacattagcaactgcctagcaaccacttagcaacagcttagcaaccacctgtaagacgttagcaactgcctagcaaccactttcaAGATTTTAGCATTtatccaaatgtttttagatttcagggtttaaccaaacatttttagttttcagcgtttaaccacacatttttagatttcaacgtttaaccaaacgtttttagatttccgTGTTTTTGGCATTTAGCGTttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTAcaataatagttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8432 lncRNA upstream 6319 24424862 ~ 24429277 (+) True G6189
TU8405 lncRNA upstream 41166 24385103 ~ 24394430 (+) True G6168
TU8404 lncRNA upstream 50670 24384435 ~ 24384926 (+) True G6167
XR_002650065.1 lncRNA upstream 156128 24274492 ~ 24279468 (+) False LOC111192656
TU8462 lncRNA downstream 284710 24741418 ~ 24795989 (+) True G6213
TU8469 lncRNA downstream 497860 24954568 ~ 25032082 (+) True G6219
TU8476 lncRNA downstream 584664 25041372 ~ 25042911 (+) True G6221
TU8662 lncRNA downstream 756709 25213417 ~ 25213701 (+) True G6363
XR_002650082.1 lncRNA downstream 806435 25263143 ~ 25280617 (+) True LOC111192677
XM_007237919.3 mRNA upstream 76294 24347555 ~ 24359302 (+) True LOC103045605
XM_007237920.3 mRNA upstream 76294 24347555 ~ 24359302 (+) False LOC103045605
XM_007237922.3 mRNA upstream 94635 24329020 ~ 24340961 (+) True LOC103046413
XM_007237923.3 mRNA upstream 94635 24329665 ~ 24340961 (+) False LOC103046413
XM_022670469.1 mRNA upstream 109058 24311042 ~ 24326538 (+) True LOC103022207
XM_022670536.1 mRNA downstream 9745 24466453 ~ 24507625 (+) True rpa1
XM_022670549.1 mRNA downstream 426846 24883554 ~ 25030569 (+) True dph1
XM_022670553.1 mRNA downstream 429047 24885755 ~ 25030569 (+) False dph1
XM_007245898.3 mRNA downstream 870621 25327329 ~ 25360956 (+) True LOC103025376
XM_007245901.3 mRNA downstream 905424 25362132 ~ 25372748 (+) True tp53i13
TU7890 other upstream 528122 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 601766 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 1084290 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 1084550 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1470672 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 955486 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1583448 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1583448 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1586351 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2462583 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile