RNA id: TU8682


Basic Information

Item Value
RNA id TU8682
length 331
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G6374
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25304183 ~ 25304685 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCATTtatactttgttttatttagcaaaCCACAGCAGACTTCCCTCCCCTGCTCTCATCAGTCCATTCATCATCTCCCCAATTCCTATTCCATATCAATCTCATGGAGATTCTCAGGTTCTTCTTGCTTCACCCAAGGTAAAGCAGGAGGCACATAGGGGTCATATGTCCATCGAGGATAGGCTCTCTTGTACAGGTTCATGAGCACAGTGTCCTGGGAACGCAGCTGACTGTCAAATACGCATTTCATGTGCCCGTGAGtacCCAAGGCATCCTTGATGTGTCCTCTTCGCCCCCACTTGGTGCGCAACTCCACTGGCTTAAACCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650082.1 lncRNA upstream 23566 25263143 ~ 25280617 (+) True LOC111192677
TU8662 lncRNA upstream 90482 25213417 ~ 25213701 (+) True G6363
TU8476 lncRNA upstream 261272 25041372 ~ 25042911 (+) True G6221
TU8469 lncRNA upstream 272101 24954568 ~ 25032082 (+) True G6219
TU8462 lncRNA upstream 508194 24741418 ~ 24795989 (+) True G6213
TU8686 lncRNA downstream 5009 25309694 ~ 25318510 (+) True G6376
TU8691 lncRNA downstream 14823 25319508 ~ 25320728 (+) True G6377
TU8778 lncRNA downstream 165992 25470677 ~ 25474186 (+) True G6441
TU8784 lncRNA downstream 185529 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA downstream 194442 25499127 ~ 25501185 (+) True G6445
XM_022670549.1 mRNA upstream 273614 24883554 ~ 25030569 (+) True dph1
XM_022670553.1 mRNA upstream 273614 24885755 ~ 25030569 (+) False dph1
XM_022670536.1 mRNA upstream 796558 24466453 ~ 24507625 (+) True rpa1
XM_015604939.2 mRNA upstream 839940 24455688 ~ 24464243 (+) False serpinf2
XM_007245898.3 mRNA downstream 22644 25327329 ~ 25360956 (+) True LOC103025376
XM_007245901.3 mRNA downstream 57447 25362132 ~ 25372748 (+) True tp53i13
XM_007245902.3 mRNA downstream 73434 25378119 ~ 25386942 (+) True LOC103026515
XM_022670632.1 mRNA downstream 86325 25391010 ~ 25397534 (+) True LOC103027284
XM_007245905.3 mRNA downstream 86327 25391012 ~ 25397534 (+) False LOC103027284
TU7890 other upstream 1396709 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1470353 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 1952877 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 1953137 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 2339259 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 107509 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 735471 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 735471 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 738374 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1614606 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile