RNA id: TU8810


Basic Information

Item Value
RNA id TU8810
length 948
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G6464
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25548738 ~ 25549685 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggtgtgccaaaaaatcgattcacataagaatcttgattctcatttactacgattcagaatcgatttaaaatgtcccaaaatcgattctgaggggcgggttttagactgattttgggctgggtatttttgttggacctggcaaccctggggatagcgcttgtcccttcaaacggagatcttccagacacacacagagcgtaggtgtttgagaatcaccggtaagatggcagaacaagcattatattaccttagattaacgtgtagttttaatgttttatggcagaatgcttcataacaagcataaaaaagatcgctagtagttagtttcagtaactgttagctagctaactagctaactttccagttccaccttaaataacgctacaggtggcagcgggctgcagcatttaaggcggaacggaaaaataacaataagctaatcagagctaatttcagctcctcatcacagaggaattaaggaatggacaatatgaattaatttctccacctcctgctccctttctgaagaaatacaacgaccttaaattaactagttaatcagcagctgctcctgaactttagcgctccagtgctatcatcacatcagcccagcagcgtcacctacacaccaccgctagtagcctggtaataaatcagtgttatttattatttatttattgttcattaacgtcattgtgatatcccagtgattcctctgtcactgaggacccacattcctgcacattttattgtttttgtaacacattacctgcttcaggaccagtgtatattttggaggcttttttcaataagattcataagccagaagcagaaatttttataaatcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaaacgattcccacccctatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8786 lncRNA upstream 45153 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 47553 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA upstream 47553 25499127 ~ 25501185 (+) True G6445
TU8778 lncRNA upstream 74552 25470677 ~ 25474186 (+) True G6441
TU8691 lncRNA upstream 228010 25319508 ~ 25320728 (+) True G6377
TU8873 lncRNA downstream 246937 25796622 ~ 25797186 (+) True G6514
TU8875 lncRNA downstream 249233 25798918 ~ 25799741 (+) True G6516
XR_002650097.1 lncRNA downstream 314701 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 314760 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 410796 25960481 ~ 25997692 (+) True G6567
XM_007245915.3 mRNA upstream 343 25530149 ~ 25548395 (+) True ccdc92b
XM_007245910.3 mRNA upstream 24283 25482105 ~ 25524455 (+) True LOC103028751
XM_007245906.3 mRNA upstream 120387 25412194 ~ 25428351 (+) True LOC103027586
XM_022670632.1 mRNA upstream 151204 25391010 ~ 25397534 (+) True LOC103027284
XM_007245905.3 mRNA upstream 151204 25391012 ~ 25397534 (+) False LOC103027284
XM_022670712.1 mRNA downstream 1537 25551222 ~ 25583981 (+) True cluh
XM_022670714.1 mRNA downstream 1537 25551222 ~ 25583981 (+) False cluh
XM_022670716.1 mRNA downstream 4667 25554352 ~ 25583981 (+) False cluh
XM_007245916.3 mRNA downstream 37094 25586779 ~ 25624804 (+) True LOC103030333
XM_022670724.1 mRNA downstream 76650 25626335 ~ 25676963 (+) False mettl16
XR_002650083.1 other upstream 120387 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1641264 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1714908 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2197432 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 490471 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 490471 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 493374 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1369606 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile