RNA id: TU8873


Basic Information

Item Value
RNA id TU8873
length 565
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G6514
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25796622 ~ 25797186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTGGGCATGCGCAGctcatttacagtttttaaacttCAGTTCTAGGACAGTGCACTCTCTGTGTCTTCAGCATCAGCTCAGACAGCACGGTCAGAACCCAGTAATGCTAGtgcatttactgtttaaaaatcgTTTGAtgtagaaaaatggaaatactcaGGCCAGCTCTCATTTCTTTTTTAGCTAAACATTTAaatctactttctaaaattaaaagtatacACTGGACAATTAGTTAGacactatttttaatttgatttttgtgCTGTTTAGCCTTTTTCCTACATTTAGCCCCCTCTAGTGATATGCAGTCATTCTCAGACATAGGGGAAGAAATAGGAAGCAGTTAGGTGCTCCATAAACCAGCACTGGTAacagtgttgtgcgtgaacgagttcaaaagaacgTGTTCATTGAACacgcaatttttttttgtgaacgctgaactgaacgcaacacattttttaataaagaacttgaacatgaattagttcacattatgtgtcatgaacTGCAGACACGCGGAGAgcgtgagcgagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8810 lncRNA upstream 246937 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 293037 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 295437 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA upstream 295437 25499127 ~ 25501185 (+) True G6445
TU8778 lncRNA upstream 322436 25470677 ~ 25474186 (+) True G6441
TU8875 lncRNA downstream 1732 25798918 ~ 25799741 (+) True G6516
XR_002650097.1 lncRNA downstream 67200 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 67259 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 163295 25960481 ~ 25997692 (+) True G6567
TU8947 lncRNA downstream 202031 25999217 ~ 26002978 (+) True G6574
XM_007245926.3 mRNA upstream 22251 25764488 ~ 25774371 (+) True exo5
XM_007245924.3 mRNA upstream 34139 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 37856 25726169 ~ 25758766 (+) True vps53
XM_022670741.1 mRNA upstream 83190 25681076 ~ 25713432 (+) True mnt
XM_007245922.3 mRNA upstream 83190 25681105 ~ 25713432 (+) False mnt
XM_007245927.3 mRNA downstream 18092 25815278 ~ 25826749 (+) True LOC103033293
XM_007245928.3 mRNA downstream 119051 25916237 ~ 25929253 (+) True aipl1
XM_015604938.2 mRNA downstream 133277 25930463 ~ 25945662 (+) False tusc5
XM_007245929.3 mRNA downstream 133282 25930468 ~ 25949493 (+) True tusc5
XM_007245938.3 mRNA downstream 319920 26117106 ~ 26121289 (+) True tmem199
XR_002650083.1 other upstream 368271 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1889148 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1962792 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2445316 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 242970 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 242970 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 245873 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1122105 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile