RNA id: TU8875


Basic Information

Item Value
RNA id TU8875
length 287
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G6516
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25798918 ~ 25799741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctcaaataatgcaaagaaaacaagtttatattcataaagtttaaagagttcagaaatcaatatttggtggaataaccctggttttaaacacagttttatgcatcttggcatgtgcttcttcaccagtcttacacactgcttttggataactttatgccactcctggtgcaaaaaatcaagttcagcttggtttgccggcttgtgatcatccatcttcctcttgattacaCTCAGGGCTCTTCTGTTCAGCTGGACGTCTCAGAAATGGTCCCGTGTTAGAATACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8873 lncRNA upstream 1732 25796622 ~ 25797186 (+) True G6514
TU8810 lncRNA upstream 249233 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 295333 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 297733 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA upstream 297733 25499127 ~ 25501185 (+) True G6445
XR_002650097.1 lncRNA downstream 64645 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 64704 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 160740 25960481 ~ 25997692 (+) True G6567
TU8947 lncRNA downstream 199476 25999217 ~ 26002978 (+) True G6574
TU8966 lncRNA downstream 248937 26048678 ~ 26051179 (+) True G6588
XM_007245926.3 mRNA upstream 24547 25764488 ~ 25774371 (+) True exo5
XM_007245924.3 mRNA upstream 36435 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 40152 25726169 ~ 25758766 (+) True vps53
XM_022670741.1 mRNA upstream 85486 25681076 ~ 25713432 (+) True mnt
XM_007245927.3 mRNA downstream 15537 25815278 ~ 25826749 (+) True LOC103033293
XM_007245928.3 mRNA downstream 116496 25916237 ~ 25929253 (+) True aipl1
XM_015604938.2 mRNA downstream 130722 25930463 ~ 25945662 (+) False tusc5
XM_007245929.3 mRNA downstream 130727 25930468 ~ 25949493 (+) True tusc5
XM_007245938.3 mRNA downstream 317365 26117106 ~ 26121289 (+) True tmem199
XR_002650083.1 other upstream 370567 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1891444 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1965088 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2447612 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 240415 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 240415 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 243318 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1119550 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile