RNA id: XR_002650097.1


Basic Information

Item Value
RNA id XR_002650097.1
length 2127
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC111192696
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25864386 ~ 25888817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGAGAGACGCGGGGCGGAGAGGAGCCGGTGCGGCGGGGGAAGACCGGCGGACCGAGGGCGGCGGGGTCGGTGTTAATCGTAGTTTATCGCAGTCGTAGTTGTGAGCAGTTGGGGCGGGTGTTGGTGCGGGTTTGCGGTCGTTTAGACGCCGTTTGGAGTGGCGGTTTTGTCGGAGGTGGCGGCTGGGAGCGCGGAGTTAGGGTTAAGGTGTGGCTTTCTGGAAAAGACCCGGTTTATCTGCGGGGTCGAGGGTCTGGAGTGGCTCTTACCTCCGGCTGGTTTTGTGGAGGGGTTTTAAGGAGGGGGCGTGGCTGTCATGGCTGGATTTTGGGTGAAAATTGTTTTAAGGAAGCGTTTGATTACACaatgagatgtgtgtgtgtgtgtatgagtgtgtgttacagaaagagagagcagcagGATGGGCTTTATTAACACTACCTAAGACTGATAGCTATAGGCAGCCAGCATTGGTGACAGGGTTTTTAGGGAGTGTAAAAGCTGTAGAAAcgtgtaagtaaataaataaatatgttatatatttaagaGTTTGACTCCCTCACGCGCTCGCTCACGCGTACATATAACCTACACCCAGGGCGTGAGCCTGCAGTCGAGTGGagccacacatacacactctcacagtgtgtgtgtgtgtgtgtttgagtgctaGTCTGCTCTCGTTCGTGTCAGATATGTGGAGAGAAAAcggtaaatttaaaaaaaggctcaggtttcagaaagaaaagaggaaaaaaaaaacaagaaaagaagaagaaggaccACAAGCACATCGACTGCTCTGAGACATCTGCTggggagagagacacacagaaagagaaatataaaaagaaagaaagagagaaagaaagaaagaaagagtCATGAGCTATGGAGAAGGACACGATCGCCAGTGTTCCCTATTGCGCCAGTGTGCCGTTTTTGTGGACCTATGGAATTCCATTGGAAAGGCGTCTAGCTGCCAAAGGTTGATTGACTCGATGCTGTCTGTCCCCTTCACCACTAATGGTCATCAAGGGAGTGACCCAGCATTTGCCCTGGTGCCCACTGGCTGACCCGCAGCAGTTCTTCACTGGCAAGCTTTATGTCCTTGTGTATCAGCTAAAGCTGCCAGCTGAAGAACTGTTGTGGTTGGCTCTTTCCTGGCACCTCAGCCGAGGAGGACACGATGATGGCGTGCACATCCATAATGGCATAGGTGAGGTTtcaggaagagaagagaaaagaggggGGGGATGGGTGGATGGGCGGATGGCTCAGACAGTAGTGCTGGCGTGATGATGGGTCAGAGGGTTCAAACCAATAGTGGATCAGACAGGTCCGGCTTTCGGTCCCCCCCTCCACCCTCCTCCTAGCTTTGCCTGGAATGCTCACGTGAGCTGTCCGGGCCTGGCTGTGCATTCTCCACAGGCATAAACAAAAGCTTCTGGCAGAGCCCATGCTGACTCAGCAACATTCCTGGCCCGGTGAGGTCCTCCTGGCCTTATTTGGGCGTGGAGCGGGTGGGGAGCGGCCGCGGCTGGGCCGTGGCTCGTCAAGTGGGGATGGGTTGACGGGGTTGACGGGAGCACCCACAgcaagaaagacaaaaagaaaaaaataaagtgatgtTCTGAGGGGTTGAAAGAAGAATTGCAgtgcacttatttttttacttattttatacttCCTTGTGTTCTCTGGAGAGGAGCCCAGGATTTTCacatgtgtttctgtttatggAACAGTCAGAGAGTTCTTTCCAGAGAACGAGCATTTTAGTTCTCTCATGCATAAACCTGTATCGCCAATTTTGcgtttttcaatttttgacagACATTGAATCTGGCAATAGGAATGCTCAAAAATAACTTGATTAATaacttgaaattaaatattttaaatgagcaCAGAAGGCGTACAAACCATGCTGGGTCTGGTTAGTGAACAGTAGCTGGGAGACACAGAACCTATTGATGTGAGGGCTTAATAGCCTCaagatattctgattggctggatatgccttttttttttttaaacactacaGTAGGCTGCTAGCCGAAGTGCTAACATCGCAGTAGCAATGTTGGATGAGTccagtagccagcatgctaacattgTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8875 lncRNA upstream 64645 25798918 ~ 25799741 (+) True G6516
TU8873 lncRNA upstream 67200 25796622 ~ 25797186 (+) True G6514
TU8810 lncRNA upstream 314701 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 360801 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 363201 25490214 ~ 25501185 (+) False G6445
TU8939 lncRNA downstream 72740 25960481 ~ 25997692 (+) True G6567
TU8947 lncRNA downstream 111476 25999217 ~ 26002978 (+) True G6574
TU8966 lncRNA downstream 160937 26048678 ~ 26051179 (+) True G6588
TU9020 lncRNA downstream 233618 26121359 ~ 26173262 (+) True G6625
TU9032 lncRNA downstream 255468 26143209 ~ 26190247 (+) True G6635
XM_007245927.3 mRNA upstream 37637 25815278 ~ 25826749 (+) True LOC103033293
XM_007245926.3 mRNA upstream 90015 25764488 ~ 25774371 (+) True exo5
XM_007245924.3 mRNA upstream 101903 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 105620 25726169 ~ 25758766 (+) True vps53
XM_022670741.1 mRNA upstream 150954 25681076 ~ 25713432 (+) True mnt
XM_007245928.3 mRNA downstream 28496 25916237 ~ 25929253 (+) True aipl1
XM_015604938.2 mRNA downstream 42722 25930463 ~ 25945662 (+) False tusc5
XM_007245929.3 mRNA downstream 42727 25930468 ~ 25949493 (+) True tusc5
XM_007245938.3 mRNA downstream 229365 26117106 ~ 26121289 (+) True tmem199
XM_007245940.3 mRNA downstream 311178 26198919 ~ 26203484 (+) True gemin4
XR_002650083.1 other upstream 436035 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1956912 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 2030556 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2513080 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 152415 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 152415 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 155318 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1031550 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile