RNA id: TU8966


Basic Information

Item Value
RNA id TU8966
length 2460
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G6588
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26048678 ~ 26051179 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTATAGGAGTTAACTTCATTTCATGTACAGGAACAGGCTgatccaaaagaaaaaaaaaaaaaattgttgaccCATATtgaagctgttctgtgaagggcATTATGTGAACAAAAATGAacatcacaaaaaatatataatattactttCACTAATGGACTGTAGGACTAGACAGTAAACATAATACTTTaagtacaaataataaaaataaaaacatgggcAAAGTTACATTTCTCAGTCAGTCAATATAGACACAGCTTAAAGTGGCACTTATGATGTGCATTAGTAAGACTTTATCCTTTTTACCTTGCGATAGAGAACAGAACACTTTGGAATGATGTTGAAgctgtagtgttatatttaacaATATACCACTTCATTTTATTTGGCCTTTTAAACGTTTGGAAATTggaaatacttatttttttgtttgtttcatagCTCAATGGACAAGTAGCCCGTTAATAACAGGACTTGAGTGACAATCTGGCTGCTTGTCCTGACTAGTTATTATTACTTCATACCCAACCTTCATATTTCCCGCATGATAGAAGCTTAATTCTTTCAGGTGATTGTCCTTGTTCAAGTGACAGAACGTAAAGCATAGCCATTCAAAAAACTGCAAACATGATCAGTGTAGTCTTAACTATTTTCTGATGGTAGTTCCATTAGTGTTATGGGTTTGTTCGTCAAAGCAACATTCACATTACATGCCTCAATAATCAGTTCTGATGATTTTGCTCAAATCGGTTTTGGCCGTCTCgatggttcacattcataaatgtaaatgatctGTAGTTAtttgtaatgtgaatgaattTGTCCCTGAACCAACAAGCATGTGCACAAAGATATATTTACGCACGTTTTCAGATTCCGGTTGGGAGACAGAATTCAACTAACAGCAGTGCTGACTGATGAAGTGTACACACTACAGATATGAATCTGATCTGAATGTTCCATTTTTCACGTTCCAACATACCGGATATATATCCAGTACCACATATAGAGAAACAATAGGAAGGAagaagagggggaaaaaaacaaaaacactcaaATCTGATCTGGCACATACaggcaaaaaatctgattttgagtcacttcagctttgtaatgtgaacacgGCCTAATTCAGATTCATACATTTTCCCATACCCACaacttaatgtttaaatatgaaCAGACTAGATTAGACATTATCTAATTCAGTTTTTGAACTGCAATAAAGGCAAACAGCTGGTTAATGGAACTGTGTTATATCACCTCCTAGGTGAAAATGCCACTATGAAGCAGTGATGCGTGATcacaaacattatttaaaaagaaaaacactaattCAGCTGGATACACATAAAACAATTGTAGATGAAGGCTACTGTTATGTGCAAGAGTTTTAGATAGGGAGGTGTTTGAGGCATTGAGTTAACACTTTACATGTAGTGATCAAATCTTACAGTGTATATCAAAGTAGTAAAGTGAGTTGTTCTTGAAGCATCTGCACATGATAGCATTTTAGGAGGATGTTGTAGAGAGGTTTGTAAGCACaatgtttttatacattaaacCCAATGAAAGACTTCTTTTTGCAGGCACACAAGTGGAAATATATCATTATGTGTGCTTTTATAAAAACTGATTGGTgtcttccaaataaaaaaaaagtcttcattGCCCAGAATAGCTTCTCTGTAATGACCAACAGGAAATGAAGGGGACACTTCTTTAACTAACAAAAGTCAATTGAAGCATTACTGTGTGCACAAAAACAAACGGTTAAAGGAATACAAATTAAGCATGTAATAGTAAACATTAATATGAGCATGATCAGTATTTCTTCAGACACCTTTTATGGAATCACATGGCAGATGATTTGTAGTGTGATAAAGGGCTCAAACGAATCCCCTTTGTAGCAGTCATCTTTTAGCAAATCAGTATGAGTAGTGTATGCTACTCAAATGCAGAGGAACAGTCCCTTACAGCAACACCCCACTGCTTACATTTAGAGTCCAAGCAgatatctcctctctctcaaaCTCACAATATTTAGGCCACACTCCAAAGTTCCGCTTAGGATAACCTATAGAGATGTCCGTAGTGTTTAGTGTCTACTTAAGTAACTTCAAATGGTTGCATAAGGTCTAATAAGGAAATTACTGCAGATAGTGTATATATTGGCATGAATGACATGATGGCACGAAAACAATGAGCGGATAGACAGGAAAAGGATCTAGTAGAAGAGGCTACTGCTGGGCATGTCAGTTATGAGGAGAtgtgaggagagtgtgtgtgcgcgcgtctAAGGGCTGTACAGGGAAGTCTGTCTCCGCTCTCAGCTTGGGTCATCGTCTGCGTTGTGCTGATCCAGTAAGCGGACGTGCGTGAAGGGAAAATGGCCCCGTTTTCCCTTGCACTCTCCCTCCCACTGCCCATTTACGTTGATCTTGGTCACCATCACCAAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8947 lncRNA upstream 45700 25999217 ~ 26002978 (+) True G6574
TU8939 lncRNA upstream 50986 25960481 ~ 25997692 (+) True G6567
TU8926 lncRNA upstream 159861 25864445 ~ 25888817 (+) True LOC111192696
XR_002650097.1 lncRNA upstream 160937 25864386 ~ 25887741 (+) False LOC111192696
TU8875 lncRNA upstream 248937 25798918 ~ 25799741 (+) True G6516
TU9020 lncRNA downstream 70180 26121359 ~ 26173262 (+) True G6625
TU9032 lncRNA downstream 92030 26143209 ~ 26190247 (+) True G6635
TU9043 lncRNA downstream 153621 26204800 ~ 26212818 (+) True G6644
TU9048 lncRNA downstream 168783 26219962 ~ 26236163 (+) True G6648
TU9062 lncRNA downstream 223361 26274540 ~ 26301016 (+) True G6660
XM_007245929.3 mRNA upstream 99185 25930468 ~ 25949493 (+) True tusc5
XM_015604938.2 mRNA upstream 103016 25930463 ~ 25945662 (+) False tusc5
XM_007245928.3 mRNA upstream 119425 25916237 ~ 25929253 (+) True aipl1
XM_007245927.3 mRNA upstream 221929 25815278 ~ 25826749 (+) True LOC103033293
XM_007245926.3 mRNA upstream 274307 25764488 ~ 25774371 (+) True exo5
XM_007245938.3 mRNA downstream 65927 26117106 ~ 26121289 (+) True tmem199
XM_007245940.3 mRNA downstream 147740 26198919 ~ 26203484 (+) True gemin4
XM_007245949.3 mRNA downstream 712566 26763745 ~ 26777988 (+) True appbp2
XM_007245951.3 mRNA downstream 738430 26789609 ~ 26867159 (+) True usp32
XM_007245952.3 mRNA downstream 738430 26789609 ~ 26867159 (+) False usp32
TU8949 other upstream 2432 26040156 ~ 26046246 (+) True G6576
TU8950 other upstream 2432 26040156 ~ 26046246 (+) False G6576
TU8951 other upstream 2432 26043059 ~ 26046246 (+) False G6576
XR_002650083.1 other upstream 620327 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2141204 23878152 ~ 23907474 (+) True LOC103022942
XR_002650136.1 other downstream 868112 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile