RNA id: TU9020


Basic Information

Item Value
RNA id TU9020
length 608
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G6625
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26121359 ~ 26173262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGtggaatacattttattttcatcatatttacagcatttatacCTAATATGGCATTTACTTGAAAACACACATATTTGATTGTGCACAGTGTAAAAGAGAAGCTTTGGCAGGACTGTAATGTGGCACTACTGATATAAtgtacaaacagaaaaaaatgagaaaaacaaaTCCTATAGTCGTTCTTGTACTAGATCCATCCTTTTAAAACAGTGACAATgataaatagattaaaaaaatgcaaataaaaaatgtgatctgtctaaattctaaaaaaaaaaaagaatataatgtACCTTTTATCTGTACATGTCTGTGTTTCAAAAGCTTTCAAAAGACTATAAAGGTGAAGTAATGTTTCTGTGTTTGCAGTCGACTAGCTGGCTTTTCATTGCAggtaaaatgatgaatttccTTCAAATTCTTAATCCTCTGGAAAAATATGTCAGAGCACACAGCGTCCATTAGAGGCCCATACTCAAACAGCACAAACAGTTACAGGAGAATGAAATAAATAGTGGCTGTTCTTGATAAACAAGAGGAAAATCACTCTAGTGTCCCTCATTCGCACCTTTTCAACTCATGAGATCCTGAACCAGATGTAATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8966 lncRNA upstream 70180 26048678 ~ 26051179 (+) True G6588
TU8947 lncRNA upstream 118381 25999217 ~ 26002978 (+) True G6574
TU8939 lncRNA upstream 123667 25960481 ~ 25997692 (+) True G6567
TU8926 lncRNA upstream 232542 25864445 ~ 25888817 (+) True LOC111192696
XR_002650097.1 lncRNA upstream 233618 25864386 ~ 25887741 (+) False LOC111192696
TU9043 lncRNA downstream 31538 26204800 ~ 26212818 (+) True G6644
TU9048 lncRNA downstream 46700 26219962 ~ 26236163 (+) True G6648
TU9062 lncRNA downstream 101278 26274540 ~ 26301016 (+) True G6660
TU9069 lncRNA downstream 229517 26402779 ~ 26405930 (+) True G6666
TU9070 lncRNA downstream 231367 26404629 ~ 26405304 (+) True G6667
XM_007245938.3 mRNA upstream 70 26117106 ~ 26121289 (+) True tmem199
XM_007245929.3 mRNA upstream 171866 25930468 ~ 25949493 (+) True tusc5
XM_015604938.2 mRNA upstream 175697 25930463 ~ 25945662 (+) False tusc5
XM_007245928.3 mRNA upstream 192106 25916237 ~ 25929253 (+) True aipl1
XM_007245927.3 mRNA upstream 294610 25815278 ~ 25826749 (+) True LOC103033293
XM_007245940.3 mRNA downstream 25657 26198919 ~ 26203484 (+) True gemin4
XM_007245949.3 mRNA downstream 590483 26763745 ~ 26777988 (+) True appbp2
XM_007245951.3 mRNA downstream 616347 26789609 ~ 26867159 (+) True usp32
XM_007245952.3 mRNA downstream 616347 26789609 ~ 26867159 (+) False usp32
XM_007245953.3 mRNA downstream 656218 26829480 ~ 26867159 (+) False usp32
TU8949 other upstream 75113 26040156 ~ 26046246 (+) True G6576
TU8950 other upstream 75113 26040156 ~ 26046246 (+) False G6576
TU8951 other upstream 75113 26043059 ~ 26046246 (+) False G6576
XR_002650083.1 other upstream 693008 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2213885 23878152 ~ 23907474 (+) True LOC103022942
XR_002650136.1 other downstream 746029 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile