RNA id: TU9069


Basic Information

Item Value
RNA id TU9069
length 328
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G6666
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26402779 ~ 26405930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGGGTGCGGGGTGCAGggaagacgaggaggcggacgcaaatgcaaacaaaaggggtttattaacaaaaacagatacacaatacacagggataactgaaaacaggactaaggaaactggggaaaccatggaacactgacagacgtaaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacagggaacaggaaacacctgggacgaaggggcggagctacaaaggaacacaggtgagtggaaaaacactggagaTGAAACACAGACatacGAAGCAGACAGACCAAGGACCTGACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9062 lncRNA upstream 101763 26274540 ~ 26301016 (+) True G6660
TU9048 lncRNA upstream 166616 26219962 ~ 26236163 (+) True G6648
TU9043 lncRNA upstream 189961 26204800 ~ 26212818 (+) True G6644
TU9032 lncRNA upstream 212532 26143209 ~ 26190247 (+) True G6635
TU9020 lncRNA upstream 229517 26121359 ~ 26173262 (+) True G6625
XR_002650106.1 lncRNA downstream 81843 26487773 ~ 26492736 (+) True LOC111192717
TU9146 lncRNA downstream 177349 26583279 ~ 26600242 (+) False G6711
TU9142 lncRNA downstream 191729 26597659 ~ 26608742 (+) True G6711
TU9205 lncRNA downstream 433111 26839041 ~ 26918466 (+) True G6756
TU9210 lncRNA downstream 483283 26889213 ~ 26891566 (+) True G6759
XM_007245940.3 mRNA upstream 199295 26198919 ~ 26203484 (+) True gemin4
XM_007245938.3 mRNA upstream 281490 26117106 ~ 26121289 (+) True tmem199
XM_007245929.3 mRNA upstream 453286 25930468 ~ 25949493 (+) True tusc5
XM_015604938.2 mRNA upstream 457117 25930463 ~ 25945662 (+) False tusc5
XM_007245928.3 mRNA upstream 473526 25916237 ~ 25929253 (+) True aipl1
XM_007245949.3 mRNA downstream 357815 26763745 ~ 26777988 (+) True appbp2
XM_007245951.3 mRNA downstream 383679 26789609 ~ 26867159 (+) True usp32
XM_007245952.3 mRNA downstream 383679 26789609 ~ 26867159 (+) False usp32
XM_007245953.3 mRNA downstream 423550 26829480 ~ 26867159 (+) False usp32
XM_007245950.3 mRNA downstream 461305 26867235 ~ 26883997 (+) True LOC103040422
TU8949 other upstream 356533 26040156 ~ 26046246 (+) True G6576
TU8950 other upstream 356533 26040156 ~ 26046246 (+) False G6576
TU8951 other upstream 356533 26043059 ~ 26046246 (+) False G6576
XR_002650083.1 other upstream 974428 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2495305 23878152 ~ 23907474 (+) True LOC103022942
XR_002650136.1 other downstream 513361 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile