RNA id: TU9205


Basic Information

Item Value
RNA id TU9205
length 269
lncRNA type read_through
GC content 0.34
exon number 2
gene id G6756
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26839041 ~ 26918466 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAATTGAACTAGatcaacaagatgcattcttttggaaaatgtactaaatgtaggatgattgtgttaagtgtaggctacttgtacaaaaccatttgcaaagatgtactaagtgcttgagacatgtacaaagcatttgaaatgtgatgaaagcaatgagaaatgccattctgttatgagaaactgcaagttagtttgggaatttgtccatgttattttgagaatgtcatctcagtttcaagaaatgagccaaaccaatggagaaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9142 lncRNA upstream 230299 26597659 ~ 26608742 (+) True G6711
TU9146 lncRNA upstream 238799 26583279 ~ 26600242 (+) False G6711
XR_002650106.1 lncRNA upstream 346305 26487773 ~ 26492736 (+) True LOC111192717
TU9069 lncRNA upstream 433111 26402779 ~ 26405930 (+) True G6666
TU9070 lncRNA upstream 433737 26404629 ~ 26405304 (+) True G6667
XM_007245949.3 mRNA upstream 61053 26763745 ~ 26777988 (+) True appbp2
XM_007245940.3 mRNA upstream 635557 26198919 ~ 26203484 (+) True gemin4
XM_007245938.3 mRNA upstream 717752 26117106 ~ 26121289 (+) True tmem199
XM_007245929.3 mRNA upstream 889548 25930468 ~ 25949493 (+) True tusc5
XM_015604938.2 mRNA upstream 893379 25930463 ~ 25945662 (+) False tusc5
XM_015604965.2 mRNA downstream 825 26919291 ~ 26931495 (+) True LOC103042574
TU8949 other upstream 792795 26040156 ~ 26046246 (+) True G6576
TU8950 other upstream 792795 26040156 ~ 26046246 (+) False G6576
TU8951 other upstream 792795 26043059 ~ 26046246 (+) False G6576
XR_002650083.1 other upstream 1410690 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2931567 23878152 ~ 23907474 (+) True LOC103022942
XR_002650136.1 other downstream 825 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile