RNA id: XM_022681181.1


Basic Information

Item Value
RNA id XM_022681181.1
length 4054
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC103038783
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9572520 ~ 9600832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTTACGTCTCAGCAAAGGGTCACTTTGAAAAGACTTTGTTTGAATGGTCATGAAAGATTTGGGACTATAATGAAAAGATTTCCCACCATTTTCTCCAAAAAAATGCATCTGCACCAAAATTTCCAACTCGTCAAAGACAAAGGAACAGAAGACAAGCCGATTTTAAGGTAAAGCTGAGCAGTTGTTCAAGGACATCATGAGGATTTTGTAAATGTTATGGAAATGTTAGTATGTGCATGGAAAAAGGCTACGTATGATAGCCAGATCATCAACCAGAGAGACAGACGTGAAAATGGTGCTGAGAGTAACTAAAACTGCGTACGAGTGGCGTTACTAGGGAGCTCTCCGGGGTGCTGAACTTGCTTCTCTGCTGAGTTACTGCTACATCACACCAGATCCAACCAGAGAGCTGAGGGACTCCATTCACTTCACACCTGCTTTATTATCTAAAACAAAGTTAAAGGGCTAAAAAGGAGCTTGAAAAAATGGTTCCCCATGGACCTGAAAAGGCAAATACGGAATGAAAATTAATCAACAGGATTGGATTTATATCCGGTAGCCCAATCATGGTGTGCTTCAATCTGGCATGAAAGGCTGTGGAGTGAACTCTACGTATCATAACGGATACTAAAAGAGGACAATGCACCATTTTCCTCTCCATTTCGGAGGTGCACTATGGGAGTTATCCAGCTATCCCTGTTGCCCCGTCCTGAGGAGCAAACACAGCCTTTCCACACTGCCGTTTTACAACATCACACTCTGGATCATTCTCGGGGTGCTTACGTTCCCGTGCTGTGTGCAATGCCTCATTTTTAAAGTTGGAGTGATGGGGCCTTGGACCTGTGACCCTGTCTTCTCCAAAGCGCTACCTGCAGTGGCGTCAAGACTGGCTATTAGTAGGATAAACGAGGACTACAGTATGGACTTGGGCTGCAAAATGGACTTTGTGGTGCTCCAGGAACCGTGTGAAACAGCAAAAGCACTGACGAATTTTGTATATCAGGAAAAGTCAGCTGATGCTTTTTTAGGGCCGGGAAACCCAGGCTACTGCAACGCAGCCGCACTCCTAGGCAAGAACTGGGATAAAGCTATCTTTTCTTGGGCTTGCATCAACTATGAACTGGATCGTTTTCAAGCCTTCCCAACTTTTGCCCGGACGTTGCCGTCACCAACACGGGTGCTCTTCACCGTGCTGAGACATTTCCGCTGGGCTAACGTTGGCATTGTGTCGTCTAATGAGGATATATGGATTGACACCGCTAACAAAGTGGCCAGCTCTCTAAGGAGCCAGGGGCTTCCCATAGGCATTGTTGCTTCTACTGGCAACAACGACACCGAGCTGGAGAGTGCACTCAGGTCCATCCAGAGTGCAGGGGCAATAAAAGTCATCATCATGTGCATgcactctgttctgattggtggGGAGCAGCAGATGAACTTCCTGCTGAAGGCCTATGACATGGGGATGACCAGCGGGAAGTACGTCTTCATGCCCTACGATACTCTGCTGTACAGCCTGCCCTACAGCGACACCTCCTACTTCACCATGCTGAACAACACCAAGCTACGCCAAGCCTACGACTCTGTTCTCACCATCACTCTGAACTCAGACCTGATGTCCTTCAACCAGGCCTTCAACATGGCCAAACAGCAGGAGGAGCTGAGCATTTTATACAGTCCTGAGCAGGTTTCTCCACTTTTTGGCACAATTTACAACGGGATGTACCTCATTGCCAGAGCTATAAACAACGCCAGGAGAGCTGGCCAGTGGCTCTCAGGCAGCAACCTGGCCCTCTACACCCGGAACGTGACATTTACCGGCTTCAACCAGAACATCACCATAGACAGCCAAGGTGAAGGACAGACGAACTATGTGATTCTGGACACTGACGGCTGGGGGACCAACCTGTACCTCTGCTATCTGGTAGACCTGGGCTCAGACATGGTGCGCTTTGCTGGCAAGTCCATTAACTACCCGGGAGGTTCCCCTCCCCCTGCTGACTCCAGCTGCTGGTTTGATCCCAATGCCATCTGCACCGGAGGTGTGGAAATAGTCTATGTCATCATAGTTTTTGTGATTGTCTTCGTTTTTGCGGTCAGTGCCGTTGGGATAAGTCTGTTCATAAGGAGGAGAATCCAACAGATCCAGTTTGTGAAAGGACCCAATCGGATCCTTCTTACTCTAGAAGATCTGACCTTCATCAACCCACAGTTAAGCAGACAAAAAATCACACTAGAAGACCTCAGCGACTCCAAAAGTCTACTTGATGAGAAGAGCGTGAGATCGCACTCTGTGAACAGCCTCGCAACAGCAACACATGAGAACTCTAATGTGGCTGTATATGAGGGTGACTGGGTGTGGTTGAAGAAGTTTGAAGAGGGCCAATTCAAGGAGGTCAAACAGAGCACCACCAAAATATTTACGAAGATGAAGGATCTCCGGAATGAGAATGTTAACCCATTTCTGGGGTTCTTTTCTGACTGTGAAATGTTTGCTGTGGTTACTGAGTACTGTTCAAGAGGAAGTCTACAGGACCTGCTGCGAAATGATGATGTTAAACTGGACTGGATGTTTAAGTCATCTTTGCTTCTGGACCTCATCAAGGGAATGAAATACCTTCACCACAGAGAATTCCCTCATGGGCGGCTGAAGTCACGTAACTGTGTAGTGGATGGAAGATTTGTCCTGAAAATAACGGATTATGGTTTCAATGAGCTTCTCGAATCCCAAAAAGCTCCAAGGAAGGAGTTTCCACCAGGAGATCTGTTTTGGACAGCTCCAGAACTTCTCAGAGACCCTGAGAGCTCACGAAGAGGGACGTATAAAGGGGACGTGTACAGCTTCGCCATCATACTCCAAGAGGTGGTCGTCCGTGGACCTCCATACTGCATGCTCGGATTGTCTGCTGAAGagaTCATCAGGAAGGTGAAGAAGCCTCCACCGATGTGCAGGCCTACAGTAGCTCCAGACCAGGCTCCACTAGAGTGTATCCAGCTGATGAAGCAGTGTTGGAGTGAACAGCCTGACAGGAGGCCTTCCTTCGATGAGATATTTGATCAGTTCAAGCTGATAAACAAGGGCAAGAAGACCAACATCATAGACTCTATGCTGCGCATGCTGGAGCAGTACTCCTCCAACCTGGAGGATCTGATTAGAGAGAGGACAGAAGAGCTGGAGGTGGAGAAACAGAGGACGGAGAAACTCCTGACAGAAATGCTGCCTCAATCTGTAGCTGAAGCACTGAAAACAGGTGCCACTGTGGAGCCAGAGTACTTTGACGAGGTCACCATCTACTTCAGTGACATTGTGGGTTTCACCACAATCTCCTCACTCAGTGACCCCATCGAGGTCGTGGACCTGCTTAATGATCTCTATACACTGTTTGATGCAGTGTTGAGTAACCACGATGTGTACAAGGTGGAAACCATTGGAGATGCCTACATGGTGGCCTCAGGTCTTCCGAAGAGGAATGGTAATAAGCATGCGGCTGAGATTGCCAACATGTCCCTGAACATCCTCAGCTCTGTGGGAAGCTTCAAGATGCGCCACATGCCAGAGGTTCCAGTCAGGATAAGAATAGGCATTCACTCAGGGTCATGTGTTGCAGGAGTAGTGGGCCTAACTATGCCTAGATACTGCCTTTTTGGTGATACAGTCAACACCGCCTCTCGTATGGAATCTACGGGTCTGCCTTATAGAATTCATGTGAACATAAGCACTGTGAAGATTCTCAACTCTCTAAACGAAGGGTACAAGATAGAAGTTCGAGGAAAGACAGAGCTGAAGGGTAAAGGCATTGAGGAAACCTACTGGCTCGTTGGGAAAGCAAACTTTGCAAAGCCTTTGCCGAAGCCTCCTGAGATCAAAGCAGGGGACAACCATGGTTTGAGTCCTGAGGAGATTGCTGCGTACAAGAGAAAGAAAGCTGAGAAAAAGGCTTGAATCCCAGAGTCAAACGCAAGGAGGGATAACTGGCAGGACATGGTGACGGACGAGATCAAGACACTTTTCCGGAAGGCTAACAGGCAGGTGGACAAGcctaaaatctgaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007601 visual perception biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3294 lncRNA upstream 66543 9505710 ~ 9505977 (+) True G2491
TU3287 lncRNA upstream 80888 9491380 ~ 9491632 (+) True G2485
TU3286 lncRNA upstream 81222 9490620 ~ 9491298 (+) True G2484
TU3283 lncRNA upstream 82578 9485560 ~ 9489942 (+) True G2481
TU3268 lncRNA upstream 107048 9464096 ~ 9465472 (+) True G2466
TU3319 lncRNA downstream 151197 9751459 ~ 9752131 (+) True G2513
TU3353 lncRNA downstream 164823 9765085 ~ 9765945 (+) True G2539
TU3358 lncRNA downstream 171174 9771436 ~ 9772691 (+) True G2543
TU3363 lncRNA downstream 181231 9781493 ~ 9782062 (+) True G2547
TU3371 lncRNA downstream 206948 9807210 ~ 9819840 (+) True G2554
XM_022681094.1 mRNA upstream 108935 9408099 ~ 9463585 (+) True LOC103045140
XM_007237177.3 mRNA upstream 416280 9154389 ~ 9156240 (+) True LOC103038411
XM_007237174.2 mRNA upstream 625284 8944461 ~ 8947236 (+) False lyrm9
XM_022671346.1 mRNA upstream 632110 8939639 ~ 8940410 (+) True LOC111192952
XM_022671338.1 mRNA upstream 718319 8846840 ~ 8854201 (+) True LOC103022607
XM_015604160.2 mRNA downstream 33831 9634093 ~ 9743491 (+) True LOC103039705
XM_007229235.3 mRNA downstream 33832 9634094 ~ 9743491 (+) False LOC103039705
XM_022681592.1 mRNA downstream 33833 9634095 ~ 9743491 (+) False LOC103039705
XM_007229236.3 mRNA downstream 33834 9634096 ~ 9743491 (+) False LOC103039705
XM_022671129.1 mRNA downstream 156574 9756836 ~ 9759186 (+) True LOC111192769
TU3170 other upstream 615128 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 625204 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 837568 8732723 ~ 8734952 (+) True G2358
TU3040 other upstream 1012042 8560066 ~ 8560478 (+) True G2304
XR_002651195.1 other upstream 2404720 7162246 ~ 7167800 (+) True LOC111194639
TU3313 other downstream 31603 9631865 ~ 9670125 (+) True G2509
XR_001518524.2 other downstream 33832 9634094 ~ 9742465 (+) False LOC103039705
TU3788 other downstream 1673736 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1687869 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 2324188 11924450 ~ 11927250 (+) True G3096

Expression Profile