RNA id: XM_007229240.3


Basic Information

Item Value
RNA id XM_007229240.3
length 4832
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC103041157
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9909552 ~ 9971315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTCAGGCAGGCGACTGCATTGACTcaaagcggagagagagagagagagagaaaaaaaaacaagcgcgTGCGCAGCTCGTGAAGAGCGTgcgagtttttttttatttggtttctaCTCAGTTTTAATAGCCGAACACGCTGAGTTTGGCTTGGTGTACGCGGTGAAGACACGCGTGAACATGTGGGGAGAAGAGTGGAGCCCTGAACGAGCCTCAGTTCTCAGAGGACTCTCATCATCACATGAAGCCATTTGAAGAGCAGGACCATCTCCAGCTGTGCCTGTGGTCAGGAAATCAGGGTACGGGCGACTGCCTCAGTGTTCACCCAAGACTTGGAAGAAGACATGCTGTACATTTATGAGCATAGGAGCTTCTACGGATCTCAACACCATGGCGCTGTTCGCATCTCAACAGTGAAACCAGTCAATTAATATATAGAGTCAGCTTGCATTTGACTTTGGTTTCTTCTGTCTATGTCGATTggaccccccctcccccctgtTTTGAATCTAAAAGCCATTAGATCATTGGGTGGAAAGTAACTGAACATTTTTTCCTCTGTTGTGGTGGTCAGCCATAGAAAGGACTATAATATTGAACATGACTCATGGGGAAGAGACTGGCCCTGAGACACACCAGGATTCTGCTGTTCTAACGTATCTGGAAGGCTTACTCATGCATCGGGTAGCAGGAGCGCAAGCTGCCACCGCAACAGACAGAGGTGAGGCTGGCAATGCCAATGAGGAGCAGAAAAACAAGGAAACATCAGGGCTTACATTGCCCCGACACAGCACTCCACAAGAGCAGGACAAAACAACTCCCCATGGAGGGACCACGCAGCATCTCAGAAAGGCTCGGCTTCTCCGATCAGAAGCTTGGACTGAGCATGAGAGCAAAAGGAGAATAACGCCTTCTGTGGAAGTTAATGGGCGAATGGAAGAGCACCACGGTGGCCTGAATGGTTCATCGCAGTGTAAAGGAGAGAGCACGCTGCTAGCAAGTCTGCTCCAGTCCTTCAACACAAGACTTCAAAACGTGGCCCTGTCACAGCAGATTGTCCAGAGCTTGATGCCACAGGATGCCTCCAGTCCAGTCAGTAAACCTGACCCAGAAGATAAGGCACCCGGGCATGGTCATGGATCAGGGCCAAGTCATTTCAAAGGGAGGACAGAGAGCAGCAAAGTCCAGAAAGCCATCAGCAGTGAGTCATATCGCCACAGACGGCCAAGTCAGGAGAGGTCATCAGAGTCTCCAATGGCACTGCAGCACAATACTCGTTCCCCTTCAACAGAATCCCTTCCTTGCACTGAGCGTTTGAAAGCTGTTGCTAATCTGGTAAATATCAGGTCGAGCCCTGCCCCATCACCCAAACCTAGTGTGGCCTGCAGTCAGCTGGCCCTACTGCTCTCTAGTGAAGCTCACCTGCAGCAGTATTCCAGAGAACAAGCCCTTAAAGCTCAGCTAGCTGGGCGATCAGCCAGCGAAAGGCTTGCAGCTATGGCCACACACCAAACCCAAGCAAAGACACAACCTTCAACTTCTGCACAGCCTCCGACAAACCAGGACGGACTAAGCTCCTTACAAATCAAAAATGGGATACCTGCTCAAATGTCAACAAGCTCCAACAGACAAAGTCCAAGCGTTAGTACAGGCCAAAGTAGGTCAGAGGGTTCAATGCGGAGGACACAACCCTTCAGAGAGCGCCGGCCAGGCAGGCCATCGCAGAACTGCAGCAGTTTGCTTCTTCAGCTTCTAAATAGCCATAACACTCCACAACGACCGAACTGCCATGGCCACCTTAAGGAGGACATGAGTGTCCCCTCTAATCGCGGTTCCCCACTGTTTTCAGACAGCGAGCATTCAAACTCTGGTAGCAGTGTACAAAAAGACAGCAGTGATGCTGAGAGCACTTACTCCAGTTGCTCTCCGATTGACCTCTCTCTaaagaataaagtaaatatgCCAACACCACTGTCTTCCTCATCTTCACCTGCACTTGACAAGGTCACTGAGTCtctgagaaacaggtggaagtCAGGGAGTCCAACTGGCATAGTCCCCACAGAACCAAAAGAGATACACAACATTTGTCCAGAGATGAAACCTCATCACAAGGTTACCCTTTTGGAGTTGCTTCTCGATCACAAAAACAACGAGAAGGCAAGCAAGGCCTTAGTTAATCCTGATTTACAGCCAGTTATAATCCAATCTATGGTCAGTAATCCATCTACAAGCAGTCCAAGTCCCTTTTATGCTGGCAGGTGTAAGGATACAAGGGAACTTAGCCCAAATTGTAGACTGAATACGAGAAGTCCTAAGCTACTGCCAACATTCTCCCAAGGCTCCAGAGACTGTAATACCCGTGCTTCACCATACAACTTATGTAGCCCTTCACATACCCAGTCTGCCCCTTTGGATCTGtgtaaaactaaaacaccttCAACTGTTGCAAGAGTTTCAAGTGTTAAAGAACCGTTCATTGCCAGCAAACTCTTGCAGAACTTGGCTCAGTGTGGGAAACAAACTCCCACCACTTCTTCTCCCCCACCAAAGGCTTCGTTACCTCCCATCAAAAGACAGACACAAGAACTTAAATCATCATCAGGTTCTGCAGCTTTGCTAGAAAGGCGCACCGCGCCCGTTCAGAAAAGCAACACCCCAACCTGGGAAGGAAGTCATATGAAAGTCCCAGCTGTAGCAGAGCCAACACAGCATGGGTCAGAGATTGAAAATCTTCTCGAGAGGCGCACAGTCTTGCAACTTCTTCTTGGGAATAAAACCCAACGAGAAAGAGTTGGTCATAAACGAAAGAGAGAGTCTGCGAAGGTCATTTCCACAGAAAAGCAAACCAACCACTCGCAATGCCAAGATAATTTGAGTAGATCCTCAACAGATGTTTCAGTCAAAACTGAGCCAGTGGAAGATGAAATTTATAATGACACCTTACAAAAAGTTACGAAGCAGCAGCAAAGCTATTTAGCAGAATCACCAAGATACAGCTCTCATATTGCTTATCAGGAAAGCATAAAAGAAGAGCCACTGTCACCGGTGGATACAGCCAGAGATGGTCTGCTTTGTCATCTTCTCCAACAGCAACACAAAACCTTAAAGCCAGCCACAGTCACAGAGGACTCAAAAAAGGGCTTTGTTAAAGAGGAACCAGTGGAGCATCAGGGACCAACCATCCCAAAGAAGCGAAAGTTTTCATCGGTTGAACCAGAGGACCAGAGAGCTGAAGTGAGCCGACAAGACGTCTGTCACAGTCCTGGTACCCAAAAGGCCAGTAGTGACTACTCGAACTCTGGAATTCCTGAAAATCAGAAATCCAGCAACCCATCCAGCCCTCCGGAAGCTGACAGTCCACCAACTAAGTTTCCACAGTGTGAATCTCACAGTAACGATGGCCGTGGATTTAATGTTTTGAAACAGCTTCTTCTTTCAGATAACTGTTTGAAGGAACTGTCCCAGTCCAGGAGTACATTCAGTCCACTGGCACATCCCACGCTAAATGGGAGTACAATCAAAGAGCCACATAACAATGGGGAGCTACAAAGCCTTCGTCAGCGCCTGAGTCCCAGCAGTGTGTCTACTGTGAGAGCAGGTACAAACAGACCTGAATCTCATTCAGAGATCTCTGTCCACGTAACACAGCAGGATTCTTCCAGGTCAAAAGCTGACATCGCCCCAACCTCCCGGGACTTGAAAGCATCAGTTAGTTTGGTGAACCTGGATGATAAATTGCAACAAGACTGCCAGCTAGAATCTCCACGATTGACTAAGGCTAACCCTATTTTATACTACATGCTCCAGAGGAGCAATGCACATCTGGTTAGAGAGAGTGCGGAGCTCGAAGCAAGGTCAGGACAGTGCAGGGTGCAGATGAAGGTGAAAGAGGAGTCTGAGGTCTTTGACTTCAAACTAAACCCACAAATTCACAACGGAACTCTCAGTTGTGACTCACCGCGGCTAAACGGGTCACTGAAGAAATCTTAGTCACAAAGTGATTCAGATCAAAAGACTTCTGGAGTTTTGGAATGAAAATGTGCTTGTCTTTCTTCACTCTGCTTCCTTATCTGTATTGCCATTTGGTTGGTCAACTGATGGAAGCTGAGCCGTCTGATTTTGTGTACGTTCATGGCCCCACTGCTTAATCTCCTGTCCTTTAGCGCTGTTTTCTGGATGACTTCCTCAAATTCACAAATGCAGAAATGAAACATTTGCTTTCTAAATCTAAATTTGAACCCACACTATATGCCAAAAGGGTTATGGTAGGGTGAATTAAGGGTGATTGGGATGTCAAGTTCTGTAATACCGATGTCAAATTTGATCTTAAGGTTTcacattcttgtttttttttccccttcacACAAGAAATAAAACCTTGCACACTTAAACTCTTTCATCTGACCATATATATCCCAATCACCCTGAATTCACcctacttaaaaaaagaagtaaaaatgcCTTCACAAGAGTTGCGTTCCAAAGCCAAGGCTGCAGTCATATGGAGACTTCTTTTCCAGAGCCTATTGGTCACGTATGTTTGGTAACTTATATGTAATGCATCATTGTAACGAGGCCTTGTGGTGATGTTACAGGAAATGTCCCACCTCTTGCAACTGCGGCACTTATGCTTTGCCTGtgcaataaaatatgtttttggttTGGAAAATATACTGTCCCAAAAATAATTGCACTACAATTATTTTAGTCAATTATCATATAAGAGCTTTTAATGCTACTGATATAATGACtgcaaatatacagctctggcaaaaatTAAGACCACTtccatttctgaatcagtttctctgattttgctatttataggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3378 lncRNA upstream 53693 9854739 ~ 9855859 (+) True G2561
TU3377 lncRNA upstream 55388 9853932 ~ 9854164 (+) True G2560
TU3376 lncRNA upstream 61711 9847002 ~ 9847841 (+) True G2559
TU3371 lncRNA upstream 89712 9807210 ~ 9819840 (+) True G2554
TU3363 lncRNA upstream 127490 9781493 ~ 9782062 (+) True G2547
TU3385 lncRNA downstream 8359 9979674 ~ 9979956 (+) True G2567
TU3413 lncRNA downstream 96204 10067519 ~ 10068311 (+) True G2592
XR_002651579.1 lncRNA downstream 132922 10104237 ~ 10120596 (+) True LOC111195257
TU3398 lncRNA downstream 149315 10120630 ~ 10123738 (+) True G2577
TU3450 lncRNA downstream 162593 10133908 ~ 10156173 (+) True G2627
XM_022671129.1 mRNA upstream 150366 9756836 ~ 9759186 (+) True LOC111192769
XM_015604160.2 mRNA upstream 166061 9634093 ~ 9743491 (+) True LOC103039705
XM_007229235.3 mRNA upstream 166061 9634094 ~ 9743491 (+) False LOC103039705
XM_022681592.1 mRNA upstream 166061 9634095 ~ 9743491 (+) False LOC103039705
XM_007229236.3 mRNA upstream 166061 9634096 ~ 9743491 (+) False LOC103039705
XM_022682063.1 mRNA downstream 20258 9991573 ~ 10006311 (+) False LOC103041662
XM_022682027.1 mRNA downstream 20259 9991574 ~ 10006311 (+) True LOC103041662
XM_007229244.2 mRNA downstream 202966 10174281 ~ 10192344 (+) True LOC103042389
XM_022682163.1 mRNA downstream 208535 10179850 ~ 10188719 (+) False LOC103042389
XM_015604137.2 mRNA downstream 255455 10226770 ~ 10239820 (+) True LOC103043114
XR_001518524.2 other upstream 167087 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 239427 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 952160 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 962236 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 1174600 8732723 ~ 8734952 (+) True G2358
TU3788 other downstream 1302683 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1316816 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 1953135 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 3011310 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 4989858 14961173 ~ 14963583 (+) True G3736

Expression Profile