RNA id: XM_022682163.1


Basic Information

Item Value
RNA id XM_022682163.1
length 2670
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103042389
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10174281 ~ 10192344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaagtaaaaaaaaaaagtatcctcGAGTGCAGTCATTAGGACTATCAAAAACggtatgatggaactggctctcatcaggaccgccacaGTAAAGAGAGACCAAAGATAAGTTAATCAGCCAGGATAAGTTACCACCCTCAGAAACCTCACATTAACagcagcaccccagataagagctcaCCTAAAtactttacagagtatttaggtttgtttaacacttataataaaaaaaaaactactacatgattcattctTTATGAATTCAGGAAAGGAAGACTGTTCAGGTTTAATAGAGAAAGTGAGGCCTATTAAAAAGGGCTCCAAAGGAAGGAGGACCATACACTGAGGCTTTggcaaaatgtttatttggagaACACTTAGACATCCgtttgctctctctgtctctctctctctctctctctctctctctctctctctcctctgtggCCGGCAGCAATAGGGTGAAGTCACTGAAACAACAAGCCAGGCGCTGATAGCAACTGCCACCAACACCCTTTTTCACAGGCTGGCTCTTCAAGGGAAGGGAAATTCAGAGAAATCACTGTTTTGAGAGACTTTGCTGAGCAGATTTGTGCGTGCAAGAGCTTGTATCTTCACTCACAGGTTGTATATGAGCTTTTGAAGAAGATTGTGACAAAATCTGAGTACGTTATCGGATGTCGCAGCGTGCTTAAGTGCTTTATCAGACAGGTTTTGTTATACAACCCAGTTACATAAGGACAAACCTTTAGCCCAGGGCCACACTGGATTAGCCTAAGTGATAGCTGTCCGTTTAGTGCAGGCGCTGTGCCCCAGCGTGCTATCGTGCACTTTTCCCCTCATTCATAATCAGTATTATGCCAGCTCATGCTGATTTCCCTTTTGGCCCACTTGCTTGGCAGTTATACAACAATGGATCACCTCTGTCCCACAGCAGCACGCGTACAGTAGTGTTTGCACTATAAAAGCGGCAAACAGTTAACAGGTTCAGCTCAGGTCAACAACCTAAACAAAAAGCCGCATGGTGGGCAGACACGCAGCATTACCGTTAGCGCTTAGCTCCGACAGCACTCAAGCATTCAGCAGCGGCTTTAAGGAAGAGCTACTCCGCCCGAGAGAGCACCATGGTGGCCTTCCTGTGCCTCACCCTGTCCTCTGTGCTGGCTCTGGCGACTGCAGGAGAGGTGAAGAACTGCCACCCACAGTGCCGATGTGAGGTGGAGAGCTACGGCCTGTTCGACAGCTTCAGTTTGACCAAGGTGGACTGCAGCGGCGTGGGTCCAGGAACTGCTCCCGTCCCCATTCCTCTGGACACGTCCCACCTGGACCTGTCCGACAACTCCATCAGCTCCATCACTGACTCCATGCTGTCTGGACCAGGCTACACCACCCTGGTCAGCCTtgaccttagcaacaacctgaTCTCCAAGGTCAGCCCGCAGGCGTTCTCCAAACTCCGCTACCTGGAGACGCTGGACCTGAGCCAGAACGCTCTGGAGAGCCTCGGAGACGGCTGCTTCTCCGGGCTTCCGTTGGCCGACGTTGACCTCAGCGACAATAGAATGCAGGTTTTTAACCTGGATCTCTTCACCACCAGGGGCCAGGAAACCCCGATTGCTGTAGATCTTTCCAATAACCTCCTCACTGCAGTCTCCAGAAACCCGCAAAGCCACGCTCCGTTTATTAAGAGCCTGGCGCTGGCGGGAAACAGGCTGAGGATggtgcccaaacttgcaggaatTCCCCTGCAGTATCTGAGCCTGGATGGAAATCTCATCACCAGCATCGAGCAGGGCGCCTTTGAGGAGATGAAAGATCTCGTCTACCTGTCTCTCAGCGGCCTGACGGAGCTGTCGACGATACAGCCCGGCAGCTTCCGAGGCCTGAGGAACCTGCAGGTCCTGGATCTCTCCAACAACCCTCAACTCAAGGGTGTAAGCCCAGTAATGTTCAGCGGACTGACTTCCTTACAGGAGCTCAATTTGTCCAAATCTGTCGAAACACCTTTGCCTGTGACCGTCTTCGACCACATGCCAAGCATTAAAAGTTTAACTCTGGGGCCAAACATGCATTGCTGGAAGACACACAAACCGGGTCAGTTTCATAGACAGATAGGACAGGCTAAGGCTAATGATATACTTACCTGTGATGTTGCTGGAATTGTCTTATAAGGTAAATAtagaattgttatatttgtattattatttttattaatttttccaAGTTTATGTGCCTTATTTCACTCAGGCCAAGATTTTACCTTATGCCTGGCAAAGTCAACCTTGTTCACCATCAGTCAAGATAGCACAGattttttggtattataaatTCTAATATGCACAGGTTACggacaaaagtattaaaatgagTTAATCCCACTTCTGCTGTAGAAAGGATCCCTACTGTCAaggaaaggctttctactaaATTTTGAAGAGCTGTGAGGCTTGCTGTGAGGATATAATTGCATTCAGCGACTTAAGCATTGGTGAggtgagatgatgatgatgatcatccCACCTCATCCAAAATACTACAACGTTTGCAATAAGAACATAGTTCCACTGCTTAACTAGTTCTACAGCATAAAtcaagctctggaaaaaaatgaagagaccacttctgaccagtttctgaatcagtatctctgatttctcccaaatttcaa

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3450 lncRNA upstream 23677 10133908 ~ 10156173 (+) True G2627
TU3398 lncRNA upstream 56112 10120630 ~ 10123738 (+) True G2577
XR_002651579.1 lncRNA upstream 59254 10104237 ~ 10120596 (+) True LOC111195257
TU3413 lncRNA upstream 111539 10067519 ~ 10068311 (+) True G2592
TU3385 lncRNA upstream 199894 9979674 ~ 9979956 (+) True G2567
TU3470 lncRNA downstream 24463 10213182 ~ 10213417 (+) True G2644
TU3482 lncRNA downstream 102980 10291699 ~ 10292515 (+) True G2654
TU3493 lncRNA downstream 223805 10412524 ~ 10413014 (+) True G2665
TU3638 lncRNA downstream 392482 10581201 ~ 10581668 (+) True G2781
TU3686 lncRNA downstream 518459 10707178 ~ 10707408 (+) True G2821
XM_022682063.1 mRNA upstream 173539 9991573 ~ 10006311 (+) False LOC103041662
XM_022682027.1 mRNA upstream 173539 9991574 ~ 10006311 (+) True LOC103041662
XM_007229240.3 mRNA upstream 208535 9909552 ~ 9971315 (+) True LOC103041157
XM_022671129.1 mRNA upstream 420664 9756836 ~ 9759186 (+) True LOC111192769
XM_007229236.3 mRNA upstream 436359 9634096 ~ 9743491 (+) False LOC103039705
XM_015604137.2 mRNA downstream 38051 10226770 ~ 10239820 (+) True LOC103043114
XM_007229245.3 mRNA downstream 38051 10226770 ~ 10239820 (+) False LOC103043114
XM_007229247.3 mRNA downstream 297767 10486486 ~ 10499361 (+) True LOC103043417
XM_007229246.3 mRNA downstream 297768 10486487 ~ 10499359 (+) False LOC103043417
NM_001320208.1 mRNA downstream 896736 11085455 ~ 11089687 (+) True LOC103042748
XR_001518524.2 other upstream 437385 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 509725 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 1222458 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 1232534 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 1444898 8732723 ~ 8734952 (+) True G2358
TU3788 other downstream 1085279 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1099412 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 1735731 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 2793906 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 4772454 14961173 ~ 14963583 (+) True G3736

Expression Profile