RNA id: XM_007229245.3


Basic Information

Item Value
RNA id XM_007229245.3
length 1142
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC103043114
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10226770 ~ 10239820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTGTGAACAGGAAGGATATGGTATTTTCCTTCTGCATGGAAAGCAACCAAATGAACTTCCTTCCTACTGAACCACCATTACAATAGTCCTGAGGGCAGCGGTCTGAAGCAGACGAGTAGTTATTACAGCTCAGAGTTAAAGCGAGATGGACAGGCTGTGCGTTAAAATACTGAGATTTATGCTTTAAACAGACTGAGGGAGGTGTTTGGAATCTATTTGGGAATGTGTGACAAATCGTCCAGCTTCTCCACGCCTTTACAGGATGCCGAATGCACTTCTGGATGGATGTCTGATGATTGTTCTGGTGTTTTCTTGTCATCTTCAAGTCGGTGTGACAGGGTGCGTAAATCGAGTGGTGGCAACCCGCGGAACCCTATATGTGCCAGAAGGGGGCAGCACCACTTTGCAGTGTGTGGTGGAGGAGTGTGGGCTGAAAGACTGGACCGGAGGATGGCGTCGGAAAGTTGGAGAACATTTCACTCCACTCACACCATCTCCACAGTTCCATCTATCCAACTACACTGTATCAGCCAACAGGACACGCCTACTACTCAACATTCAGaatctcagccaatcagattcagggGGGTATAATTGCATGGTCCAAAGTCTGCATTACACCAGTCAAGGGCATATAACATACCTCAACGTGACGTCAGCTGAGTCGACACACAGAAAGCTCTCTCATAGGATACTGGTGTGGATTGGTGCCAGTCTGTGTTTTCCTCTGGCTCTGGGCCTGTCCTGCTGTCTGGCCTCCATACGACTGCGTCCACCACCTGTTCCACCACGCTTCAGAAGCTCCTCCACTGCTCGAGTTAAACCTAAAATCGAGGTTGTGTACACATCTGTAGTCCTGAAGAGTCCGAGACAGACAAAATCCAAGagtcctgcagagagagagccCACTGTATACACCTCACTTAACTTCTCTGTAGTCTGAGGATCCAGACCTTCACCCACCGGATCTTATCTTGCCTGGAAGAAGACTCCTCAGACCTCTCaggttctaaaaaaaaacatttccatgCAGCAGTTGAGTGTTTATTCATCACTGTATTGGTTCATTCTGTCggagattcttgagaacaatgttgaagaatcagtgaaaaagttgaagttaaagcacCGTGGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3470 lncRNA upstream 13353 10213182 ~ 10213417 (+) True G2644
TU3450 lncRNA upstream 70597 10133908 ~ 10156173 (+) True G2627
TU3398 lncRNA upstream 103032 10120630 ~ 10123738 (+) True G2577
XR_002651579.1 lncRNA upstream 106174 10104237 ~ 10120596 (+) True LOC111195257
TU3413 lncRNA upstream 158459 10067519 ~ 10068311 (+) True G2592
TU3482 lncRNA downstream 51879 10291699 ~ 10292515 (+) True G2654
TU3493 lncRNA downstream 172704 10412524 ~ 10413014 (+) True G2665
TU3638 lncRNA downstream 341381 10581201 ~ 10581668 (+) True G2781
TU3686 lncRNA downstream 467358 10707178 ~ 10707408 (+) True G2821
TU3687 lncRNA downstream 467734 10707554 ~ 10707843 (+) True G2822
XM_007229244.2 mRNA upstream 34426 10174281 ~ 10192344 (+) True LOC103042389
XM_022682163.1 mRNA upstream 38051 10179850 ~ 10188719 (+) False LOC103042389
XM_022682063.1 mRNA upstream 220459 9991573 ~ 10006311 (+) False LOC103041662
XM_022682027.1 mRNA upstream 220459 9991574 ~ 10006311 (+) True LOC103041662
XM_007229240.3 mRNA upstream 255455 9909552 ~ 9971315 (+) True LOC103041157
XM_007229247.3 mRNA downstream 246666 10486486 ~ 10499361 (+) True LOC103043417
XM_007229246.3 mRNA downstream 246667 10486487 ~ 10499359 (+) False LOC103043417
NM_001320208.1 mRNA downstream 845635 11085455 ~ 11089687 (+) True LOC103042748
XM_007236576.3 mRNA downstream 852337 11092157 ~ 11116667 (+) True unc119
XM_022683375.1 mRNA downstream 1017921 11257741 ~ 11258661 (+) True LOC111195540
XR_001518524.2 other upstream 484305 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 556645 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 1269378 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 1279454 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 1491818 8732723 ~ 8734952 (+) True G2358
TU3788 other downstream 1034178 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1048311 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 1684630 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 2742805 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 4721353 14961173 ~ 14963583 (+) True G3736

Expression Profile