RNA id: XM_007231017.3


Basic Information

Item Value
RNA id XM_007231017.3
length 4560
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC103030891
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19068463 ~ 19101318 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ActtattaaaacttaaaaaaacggATTTTGCTCAAATGCTCAATaggaacccattcattttggactcccTCACTAGCGCCCTCCAATGTCTGAGAGCCACTGAAACACCATGGTTTAGTGGGTGTTCTCCTCTGTATAAGCTCTGTGGCAGGACTGGGTTTAgtagcgctgctgctgctggtgaggAGAAGTTTGGACTCTTCCACATTAAAAATTAGCATTAAAATATCAGCGCAGATCCGCTATATTCCCTCTAAATGACGACTTGCGGTTAATTAAACACTCAGACGGCGATAATGGATGCAGTTAAGGCCTTTAACGTGGAGATGCTGTCCATGATGGACATGAAGCCTCCAATTTCCAGAGCCAAGATGATGTCCATCACGAAAGCTGGAATAAAAGCAATCAAgCTGTATAAACATGTTGTCCAGATAATTGAGAAATTCATCAAGAGGTGTGGGCCGGAGCTGAAGGTTCCAGGGCTGTATGTGGTGGACTCTATTATCAGGCAGTCTCGACATCAGTTCGGAGAAGATAAAGATgtgttcgggccgagatttctgAAGAACATGAATGAAACCTTCCAGAGCCTCTACCAGTGTCCTCCAGACGATAAAGCAAAGATCCTGCGTGTGCTGAATTTATGGCAGAAGAACTCTGTGTTTGGGATGGATGTCATTCAGCCCCTGCTGGACCTGGCTACAGCTTCGTTTACACCTGTCCTGGAGAATGGTACTACCCTAGAAGGGTCTCCAGCTGCCCAGCTACCCTCTGTATCTGTCCCCGCTGCTCTGGACCAGCCTGTCACTACGAGAATCTTTTCTGAACAACCAAACCCGGCGGCTCTACCCCAGCTCCAGAACCTGAACGCTCTGCCCCAGCAGCAACCCCAAGTTCAGAACCCGGCGGTTATTCCTCAAATTCCTCAGTTTCAGAACCTGAACGCTCTGCCCCAGCAGCTACCCCAGGTTCAGAACCCGGCAATTATGCCTCAAATTCCCCAGTTCCAGAACCTGGCGACTATGCCCCAGATACCACAGCATCACAACCCAACAGCTCTGCCCCAGCTGCAGAACCCGTCAACTGTGCAGCCACTACAGAACGTTGCAGCTCTGCCCCAGCAGCAGAGCCCAGCGGCTGCCCCGCCACTGCAGAACCCAGCGGCTCTCGCTGCCGTCACTCAGTTCTTACAGTCTGCTCAGGGCTTAAATCTCCAGCAGATGCTGCAGAATCTTCAGCAGGGAGGTGCTAATGCGCAGCCAGCAGCCCAGACTGCTGCACCCACCCAGCAGAAAAGCTCAATTGCAAAGGTCTTACTGGACCGTTTTGATTATGATGAGGAACCGGATGCGGTGGAGGAGCCAACTCAGGAGGAAACGACTCCTGCTGTGTCTGCAGCTGTAAACCTTGAAGCCCTCCAGCAAGCTTTGCAAGCCCACCTTTTAGGCCAGCTTTCCAGCCAGTTGCTTCCTAATGAGCAGGCAGCGCCACAGAACTTGCCGGTTCCACAGACAGTGGCTGGTTTGGTGCAGGCCAACGGTCAAGGACAGGCCATCCTTCCACACAGCCAGTTACAAGGAGCTTCTGAGACACTACAGACCCAAAACCATGGTCATGTTGAAGCAGAACTGCCGGTACAGGACGTACCACTGGAGTCCCCTCAGCCCAGGAGAGATGAAAGGGATTCGAGGTACAGCAGACGATCACGGTCCAGGTCTCCTAGAAGACGGTCATCCTCACACTCGAGGAGATCCCGCTCCGGGTCTCGGTCACGTCGCTCGAGGTTTCGTCGCTCACGGTCTCGCTCCAGGGAGCGGAGGAGGGGCTCTCCCAGGAGGCGGGCGGACGACAGGCGAACAGATGACAGGAGGAGGGATGACAGGAGGGTAGACGACAGGAGGGCGGATGACAGGCGAGCAGATGACCgacatgaaagagagagaaaacagaaaggttTTCCTTCCACCAAGAGAGAAACGCTCACCGTGTGCAGCACAACTCTGTGGATCGGTCAGCTGGATAAGaaaacccagcagcaggacgtCACCAGCCTGATTGAAGAGTTTGGACAGGTCGAATCAGTCAATATGATTCCACCAAGAGGCTGTGCCTACGTAGTCATGGTGCACAGACAGGATGCCTACACAGCCCTGACCAAGCTTAGCAGAGGCAGCGCCAAAATCAACCACAAACCCTTCAAGATTGCGTGGgcgcttaataaaggagtaaactCGCGATTTAAGAAGTATTGGGACGTGGACCTGGGAGTCACATACATCCCCTGGAGTAAGCTGAAGACTGCTGAGATATTGGGTCTGCGAGAGGGAGGCACACTGGACCAGGACTCTTTCAAACCAGAGTGGGTGTCGATGCTGGACGACCTGCTGAAACCAGTGGGAGATAACCGAGGAAAGCTTGAAGGAGGAGATGGTGAAGGAGCTGCTGTCGCCGCGGCTGGGCCACAGGTTCCAGTAGTGAATGTAGAAGTTGCGAGGTCTCCTGCTGCTGTGACCCCTGCTGTTACCTCACCCCCCCACAAACACTTAGCACCAGACCAGCCAGATGTTCCCTCAGCAAACCCAACAGAAGGCAAAGAGAATCAGACTGAATCCCCTGAAGTTCTCCTGCCCACCAGCCCTCCTGCTGTACCCTTTGTTGGAACAGGGCCCGGACCCCTGCAGCATCCTCCAAGACCCCTTCCTCCGTTTACTTCACCATTCCCCAACAACATGCATCCAAACATGACTCCAATGAACACGCCCCATCCAAACATGCCTCCTATGCGTATGCCTCAGCCAATGATGATACCCCAGGGCCCCATGTTCAGAGAGAGACCACCACGACCCACTGGACCCATTGGACCAATGGGACCCCAAGGACCGATGGGACCTCAGAGACCTATAGGACCCCATGGACCTATGGGACCCCAGAGACCTATGGGGCCCCAGAGACCTATTGGACCCCAGAGGCCTATGGGACCCCAGGGACCTATCGGACCCCCAGGACCCTTGGGCCCCCCTGGCAGGTTCAGGATGCCAATGCGTGGCCCACGTGAAGGATTCCCGCACCCTAGGGAGGGGTTCCAACCCCCTAGAGAAGGCTTTCAACCCCCCAGGCCAAGGTTCCCACCTTCAGGACCCATGGAGGGGGAGAACTGGGACCATGGCCCTTTGATGAATGACTGGCATGACAATGGGCCCAACAGGGGTCCAGAATGGTTTGGAGAGGAGCCTCCCTTCAGACGTGGAGGGTGGGGCCGAGGTGGCCCAAGGGGACGAGGCCATTTCTGAACCTGAGATTTAAAGCTGGGTGTTCTTAAAGAACTGAAAGAAGTTTGAAAGATTGGCCTCACTAACTATTAAGACTTTTGTTGCTACGGACAAACGTGGACTTCTGAGGTTACGTGTGCCAATAAACATGAGCCCCAATGGTCAGGCTGTTTCAGGAGTGAGTGAACTTTGAGTGTGTGCGCAAGACTGTTAAAAGGTCATCTCTACTGAAGTAAAGGGCGAATTGTACTTCTATGTCGAGTCAAGGCAGAGTCTACAGTGCAAGTGACACACGCCAATGTGGGCATTTATACTTGTGCGCTGGTGTGTCTGCAGTTCTTTGCGGTTACtccattaaaacagtaatgtaAAGGCGGGAATATGATGCTtagtggaccaatcacagttgcTAAGATCTCCAGCACTGTGACAGCAACAGGCTATGCCATAGGCTACAGCATAGATTCAGTGCATTAAATTCTGCACAGAAGCATAAATCAGCCTTAAGTGTGGCATTGTGAGGTCATTTTGGAATAGCGCCCTTTCAGAAGACTGCTTTGGGAGGTGACCTTTAATCCCCAATAGAACGTTTTAATTGGGCCTGAAATTAGGCAAAGTTACTATTGAAACAATTCTGAGGTCACGTGTGTCAGCGAATGTGACTTGAGGTCGCAAAGACATTTAGCCAattcttttaaaacttttcaaAACTACAAGACTGTCATTTCTATCAAACTTAGGATGTCGTTCTCAGGTCACATGTGCTCAATAAACATGACTGGACCTAAACGGACATGTTtaagtccccccccccccccccccccccccccccccacagacTGTAGACTTTGGGTCTCTGTGAACTCTACAAGGCTATAGAAATGTCACTGCTGTTAAAATAAGTAGGCCATTCTGTGATCACGTGGGCCAACAACATGTCCAGGTGGAAAGATCTGCCCGCTGGGGAAGGTGATTTTAAATCCCCAAAGACTGTTTCTAAGGTTTGGGCTCCAGCTTGAATCCAGTGAAGACGAATGGGTTGCAGTAGAAATGTCATTGCCTTGGTAATATATGCGTGATCCTGGAGTCACGTGAGTCCGTTACCAGAGTTTTCTTCGTGTTTGAAGAATCCAGCAGGCTGTTGACTTCAAGTGTAATttagtttaagttttaagaCTGTAGAAACCTTTTTTCCATTCTAGGGTATCGTGTGGCTGTACACATGAATGGGCCTCAGGGCTACtttctgtaaaaatatttttcatgttGAAATAAATGGAGTATTTCAAGG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6379 lncRNA upstream 24090 19041392 ~ 19044373 (+) True G4751
TU6370 lncRNA upstream 63947 19003275 ~ 19004516 (+) True G4746
TU6366 lncRNA upstream 77515 18990429 ~ 18990948 (+) True G4742
TU6340 lncRNA upstream 125065 18941227 ~ 18943398 (+) True G4717
TU6342 lncRNA upstream 178252 18889993 ~ 18890211 (+) True G4719
TU6381 lncRNA downstream 290 19101608 ~ 19102049 (+) True G4753
TU6389 lncRNA downstream 3451 19104769 ~ 19152047 (+) True G4761
TU6449 lncRNA downstream 177453 19278771 ~ 19279016 (+) True G4809
TU6500 lncRNA downstream 538058 19639376 ~ 19648833 (+) True G4853
TU6548 lncRNA downstream 632203 19733521 ~ 19735640 (+) True G4892
XM_022669322.1 mRNA upstream 138643 18905646 ~ 18929820 (+) True LOC103038796
XM_022669310.1 mRNA upstream 197644 18666879 ~ 18870819 (+) True fat3
XM_007233954.3 mRNA upstream 569332 18487006 ~ 18499131 (+) True LOC103035466
XM_015601483.2 mRNA upstream 647493 18407119 ~ 18420970 (+) True LOC103034503
XM_007233951.3 mRNA upstream 668325 18389428 ~ 18400138 (+) True LOC103034176
XM_022671405.1 mRNA downstream 739901 19841219 ~ 19841977 (+) True LOC111192961
XM_007247674.3 mRNA downstream 1419896 20521214 ~ 20536207 (+) True psmd2
XM_015605437.2 mRNA downstream 1436402 20537720 ~ 20545404 (+) True LOC107197593
XM_007247670.2 mRNA downstream 1444222 20545540 ~ 20548431 (+) True LOC103036360
XM_022669425.1 mRNA downstream 1454141 20555459 ~ 20557658 (+) True LOC111192413
TU6209 other upstream 308605 18759375 ~ 18759858 (+) True G4612
TU6210 other upstream 308605 18759375 ~ 18759858 (+) False G4612
TU6211 other upstream 308605 18759375 ~ 18759858 (+) False G4612
trnag-ucc other upstream 664687 18403705 ~ 18403776 (+) True trnag-ucc
trnaw-cca other upstream 667338 18401054 ~ 18401125 (+) True trnaw-cca
TU6404 other downstream 59413 19160731 ~ 19165631 (+) True G4775
TU6659 other downstream 1447899 20549217 ~ 20551609 (+) False LOC107197594
TU6745 other downstream 1882389 20983707 ~ 20999200 (+) True G5026
trnag-ucc_4 other downstream 3488142 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 3489183 22590501 ~ 22590572 (+) True trnag-ucc_5

Expression Profile