RNA id: XM_007232346.3


Basic Information

Item Value
RNA id XM_007232346.3
length 1416
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC103026933
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11876926 ~ 11880070 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCTCGCTCCTGAGCAGAGTGTGTGATTGTTTAGCTTCAAGTTTGGAATCTTCATCAGTCCATTATTACTACTGACTTCagGTCACAGACATGGCTGAGGTGATTAAAAGCCTTAATCTGCTGGAGAGTCTGAAAGAGTCGATTGAGAAGAACAACATTTCTGACATAAAGGATGCAGTTGAAGACATGTTGATAAGTCGTATCAACATTGCGGTGGTGGGGGAACGAGGAAGGGAGAAAGCAGCATTCATTAATTCTCTCAGAGGACTCTGTGTTGGGGATGGAGGAGCTGCTCTCTGTCCTTCTTCTGCGGCTCCAGACGAACTGGCTGTGTTCCCGAATCCAAAGCATCCAGATTTCCGTCTATGGGATTTGCCTGCAATTCCTAGTGACCCTGCTTTTGACCCTGAGAATTACGTGGAGCGATATAAAGTAATACGTTATAATTCTGTTATCATGACCTTCACAGAAAACCCCAGTTCAAATATGGTTGCTTTCTGGAGAGAGGCACGGTCACTGCAGAAAGACACACCCTATTTTGCCTTACTGGCTTCGGATAAGGACACTGAGAAAACCTTGGACTCCAAAAAGAAGACCAGCCTGGAGTTATTAAAAGCAGAAGGATTGTCTCAGCCTAAAGTGTTTCTTGTGTGTCCCTCTGCTTTGGAAAAGCTGGAGTTTCTAAAGCTGTTAGAGGTGATGCTAGGTGACCTTCCTGAGATCAGGGCTCATGCTCTTCTGTTGGCCCTGCCTACGTTTTCCAGCACCTTGGTGGCCCAGAAAAAAGATGCTTTTCAAGCCCTCGGCTGGGCAGCAGCTTCACTCTCTGCTGGGGTTTCTACTATTCCTGTGCCCCTGGTGTCTTCTGCGGTGGATGCCAGCATTGCAGTAAGGATTCTAACAAAGGCCCAAATCTCTCTTTGTCTGGATGATGAGTCAGTGGACAGGTTGGCACGACAAAGAGGCAAAGATCCAGCCAAACTGAGGGAACTGCGAACCTGCCTTCTGTCTGTGGAAGTCTGCAAGAGCGAAGTGAAGAGGAGGCTTTCAGTGGCTGAGAAAGAAAACAGCACATCCACCACAAAGCTGGTAGAGCTGGCGATGCCACGCTACGCCAGATCCGTCAGCCGCTCCTTCACAGTCATGCTGCAGGCCATCAACTCTGCCATTGATGACATGAGTGCTGATGCTAATAAGATCATAGCAGTGGCAACTGGGGCTTCACAGTGACAAAAAGGGCAATTTCTTACTTTTGGTGACAGAATTGATGCTGCAATGCTGCAAATGAGTAGAAGTATGCAAATGAGATACATCAATGAGACACAAGCAGTCGTCATTTCatgcctcgactactgcaatgccctgctaactggcctcctggcctgcgtagtaaaaccactccaaatgatccagac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3897 lncRNA upstream 122815 11731522 ~ 11754111 (+) True G2983
TU3894 lncRNA upstream 165578 11698557 ~ 11711348 (+) True LOC111195845
TU3902 lncRNA upstream 170494 11704873 ~ 11706432 (+) True G2985
XR_002651868.1 lncRNA upstream 176799 11699096 ~ 11700127 (+) False LOC111195845
TU3892 lncRNA upstream 246095 11629773 ~ 11630831 (+) False LOC111192815
TU4042 lncRNA downstream 44380 11924450 ~ 11927250 (+) False G3096
XR_002652018.1 lncRNA downstream 78005 11958075 ~ 11958465 (+) True LOC111196183
TU4082 lncRNA downstream 226321 12106391 ~ 12109036 (+) True G3129
TU4166 lncRNA downstream 366907 12246977 ~ 12252612 (+) True G3179
TU4203 lncRNA downstream 697010 12577080 ~ 12658307 (+) True G3205
XM_022685259.1 mRNA upstream 4585 11851902 ~ 11872341 (+) True LOC103031523
XM_022685272.1 mRNA upstream 4585 11851903 ~ 11872341 (+) False LOC103031523
XM_022685032.1 mRNA upstream 33005 11810175 ~ 11843921 (+) False LOC103031217
XM_022685065.1 mRNA upstream 33005 11818351 ~ 11843921 (+) True LOC103031217
XM_022684998.1 mRNA upstream 33005 11818352 ~ 11843921 (+) False LOC103031217
XM_022685327.1 mRNA downstream 4232 11884302 ~ 11910531 (+) True LOC103027225
XM_007234491.3 mRNA downstream 408049 12288119 ~ 12602536 (+) True LOC103046499
XM_007234495.3 mRNA downstream 408051 12288121 ~ 12602536 (+) False LOC103046499
XM_007234492.3 mRNA downstream 408051 12288121 ~ 12602536 (+) False LOC103046499
XM_007234493.3 mRNA downstream 408051 12288121 ~ 12600589 (+) False LOC103046499
TU3793 other upstream 588080 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 597767 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 2134461 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 2206801 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 2919534 8944479 ~ 8957392 (+) True lyrm9
TU4041 other downstream 44380 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 1102555 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 3081103 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 3158485 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 3166243 15046313 ~ 15046384 (+) True trnae-uuc_1

Expression Profile