RNA id: XM_007233951.3


Basic Information

Item Value
RNA id XM_007233951.3
length 6044
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC103034176
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18389428 ~ 18400138 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctctttcacacacacacacacacacgcctcaCACATGACATCATGGCTGCGTTAGGGCCGGATCTGCTCGCTCTCGGGGAATGAGAGGCAGTGATTCTGCTGGTGTTTTCCTCTTATTTGCGTTTTAACCCCGGGCAGCTCCTCCACAAACCTCCAGCGACCCAAATGCGTCCGGCTGCGGCTCTCCGCGTCCGCCGCATCCCACCCTCTCATGCTCCGCGTCTGGCTGTAGTCTCCTCGCTCCACTGTTTCCAGGTCGGGCAGTCGGCGTTTCCTTGCGCTAAAGATGGCCGGCGATGGAGGCGCTCTGAAGGATATCAATGAGATCAAGTCCCAATTCAGGACCAGGGAGGGTTTCTACAAGCTGCTGACGCTGTCCGACTCCCAGCAGCGCGGCGGCTTACCGCGGGGGCCCGGGGCGGCGGGCACGGCGGCGGCCCCAGGCGCTCCGGGCACGGTGGGCGGCGTTGGGCTGGTGCAGGGCCCCGGTGCTGGGGCTGCTGGAGCTGCCGGAGCGGGGGCCGGGGGCAGCTCCTCTCCGGCTGGCTTTCTTCCTCCGGTGCGGGTCTCCATGGTCAAACTGCAGCCGGAGGACCCGAGCGAGGAGTCCGAGCGAGTGTGCTTCAACATCGGCAGGGAACTTTACTTCTACACCTACACCAACATCAAAAAGGCAGTGGACCTTAGTAAGCCTATCGATAAGCGCATATATAAAGGGACACAGCCAACTTGCCATGATTTTAATCAGTATTCAGCCACTGCAGACAGTGTGGCTCTTATTGTGGGCTTCTCTGCTGGGCAGGTGCAGTACCTGGACCCTATCAAGAAGGAAACCAGCAAACTTTTTAATGAGGAGAGGTTAATTGACAAAACTAAAGTGACATGTCTAAAGTGGTTGCCTAAATCAGAAAACTTGTTTCTGGCCTCCCATGCCAGTGGCCACCTCTACCTCTACAATGTGGAGCACCCATGTGGCACTACAGCGCCGCAGTATTCACTACTCCGGCAGGGTGAGGGGTTTGCTGTCTATGCCTGCAAGACCAAGACACCTCGAAACCCTTTACTGCGCTGGGCCGTGGGAGAAGGCGGTCTAAATGAGTTTGCGTTTTCGCCTGATGGTGTGCACGTAGCCTGCGTTGGCCAGGACGGCTGCCTCCGTGTCTTCCACTTCGACTCTATGGAGCTACAAGGTGTCATGAAGAGTTACTTCGGTGGCCTGCTCTGTGTCTCCTGGAGTCCGGACGGGAAATACCTGGCTACAGGCGGCGAGGATGACCTGGTCACTGTTTGGTCGTTTGCAGAAAGTCGAGTGGTGGCGCGAGGTCACGGCCATAAGTCGTGGGTCAACGTTGTGGCTTTTGACCCCTTTACCACCAGCTTAGAAGAAGACGAACCAATGGAACTCAGCGGCAGTGAAGAGGACCTCCACCAGGGGCCACTAAACTTTGGCCGTGTGCGTACTAGCAGCACCCTATCGCGTCTGTCTCGCCATAGCTCCAAAGGCACTCCGTCCGTGTCGTACCGTTTTGGATCCGTCGGACAGGACACACAGTTTTGCTTGTGGGATCTTACGGACGACGTTCTCTATCCGCGACTGCCGCTGTCCCGCGCACTCACGAACACCTTCGGCCCAAACATGCCACCTTCCATCAGTGGAGGGATGAACAGCACAAGTGGAAGTGGAGGAGTTGAAGGTCACCATCACCCCACCAACCCCCACCAGCCCCCGACGCTGCCCCTGCCTCTACCTCGATCGCTCTCCCGCTCAAACTCCCTCCCTCACCCTGCTGTTGCGAACACCTCCAAAGGGCAGGGGACAACAGAGAGCGGAGGGACAGGTGGGAGTGGCGGCGGAGGAGGAGGCACCCCATTTAGCATTGGACGCTTTGCGACGTTATCGCTTCAAGAGCGCAAATCGGACAAATCCGGTGTGGGAGGGGAAAAGGAACACAAGCGCTACCATAGCCTCGGGAACATTAGCAAGAGCAATGACAAGATCAACGTAGCGCCACGTAGCAACAGGCTGGACGCCTCAAAGGTGCTGGGAACAACACTGTGCCCACGGATGAATGAGGTACCGCTGCTGGAGCCCCTAGTGTGTAAGAAGATCGCCCACGAGAGGCTCACCGTTCTTGTCTTCATGGACGATTGCATCATTACAGCATGCCAAGAGGGGCTTATCTGTACATGGGCGCGGCCAGGTAAAGCGcatCCTTCTCAACCATTGTCGACGCAAAATGGGAACTCACCAAGTGGGACAGTGGTATAGCCGGTGGTGGCGCTTTTCACTTGATCACCTGCAGCCACGTCCTGTTTCTGTCCTGTTACTACAGGCGAGACTTGCTGTCCTTGAGGCCAGGACTTGGTCTGTCACAGTGTTCCCACTGTTACATCCAAACGTGTACCCTCACTTCAGAACTGTCACATCCTCATAACCACAGACATACAGTagatacacatgcacacacctgCAGCTGATTTAAAgactactaacacacacatacaacacataTAAGGACATTGGCACAATCCAAGTCACAAGTATAGTAGGCATCCTAACTCCCGTGTCTGTGCCCTCCGCCCCATTCCCTTTGGACTGCAGAGAAGCAGGGAGATCGACACATTCCTTCCGTCACCTTTAAAGGATGAAACgagagagtaagaaaaagaaggaaagaaaataagaagaaaaaaaaaactgcaaaagcCACAATGCCACGGCCATCATATAtgtatcttatttatttattttatcattgaaactgtaataatttatattgtacATATTCAGAATACTCTATAAAGGCAGAGGACTAAATGTATTGAAATAATGAactgaaataattaatatatgaaGATCCTATATTGTACATAGTGACAGTTGCATTGAATGTTTTGAGAAACTTGTAGGGAGATTTAGTGTGTCCGTATGCTAGCTCTCCTTACGCTGACCATGCAGGCCAATGAGTAGGGCTTGATGAAGTAGGTGCTTTCTAGCCTTGATTAAGAGTTGGCCTAAGTGCATTTTCTCAGACAGCTAGGCTCATCAAGAACGTCCTAAAAAGCTGCGAAAGCTGTGCGTTCAGCAAGGCTAACATCCTAGTCCTGCTTAAATGTTGAGGTAAGTTTCTCTTAGATTTTAACAATTCATAAACACTTCGGCCACACTGTGAGAACCCCCTCTGCTGGTGTATCTTGAGGGTAAGAAGGACTTCGGAAGAACTACATAACTGCTTTAAGGTGGACTGTTAAGGGTCATGTTTGAAATACTTGTAGCTTTTAAGGGTCATGTATTTTACTTGTATGTATTCAAATGAATACACCAATTTCAATCTTTGTAACAGTCACTACCTACATAGAGGAGCAATGCGTCCTATGTTAGAGTATGGAGCTAATGTGGAGTAGTTTGTGATAACATACTTGCCACaaaaaagaactttaaaatAGCCTTAAAATAAAGGGCCGAAGAAGTAAGTAAAAGGGTGACTACCACCATAGATAAATTGTTACAACTTTAAATAAGGATGACGTGCTGACATGCTAGgttgccagaaaaaaaaaacaaagcttcaGGTCATTTAGCAAAGTTAGCCTAATTAGCAAGCTAGAGACAGCTGTGCTACCTAACTCGTGCACAAAAAGTTAGTAAATTTGTGTAGATGAATTCTTTACTACAATTCTTCTCCAcaataaatcttatattgttggaaagcctgttaatttatcttttaaatGGTGCCACATTTGTAAGGAACAAATGTGCAGAGCTGAGAATGTGGGTTGCATGAAAAATTTGCCAAATCTTCTCTGCCATAGCCAAATAGCTTATTTCTATTGACTTGATGTTTGATGATTTTTTGGGGGTGTTGTCTTCTTGGTATTCCCACTTTGCAGCCTGTCTCTCACATCCCCTGTTAGTTGGAGCATGGCCTTCAATTTGGAGATGGTATCAGGGCTAAATCCAAGTAATGTTACAAATGGCCGCTGGTTTTGCCGATCACCAGCTTGAAGTTGTCCTATCGCACAGGCCCTATCCAGATCAGCCAAATGTGGTATGATGCAGATATTTGGAGCTGACACCTACTGACCACTGTTGCAGGGCCTATGCTCACAGGAACCTGATTGGGAGCACCTGGGGGAACTATTAGCTCAAAAAAAGTGTCAATGGCAACAGCAAAATAAGCTGTTTAGCATTGGCAGAGAAAGCTTTGCTGTTCATCCCACAAATGCATCTTCTTTAAAAATCTGGCTCCATTTAAAAGGGAAATTAACAAGGTTTCCAATGGTTTAAGACTTGTTTACAAGAAGCAttggtacaaaaataaaataatctaccaaacacaaatatcctttttgttttcttgttttaaaaatataagcaAACTTATATGTAAAAGCATACAATCTGCTTTTCACTGATTTGTTGGCCTGTTTCAGGTAGACACCAGTTTCAGTATTAAAGTACTAGTGCCACAAGGAGTCAAGTATCCTTAAACTCCACCCTAAATGCAGTAGCTGTAGTTTTTCTTTCTGCCAAAAGTTCCAGGATATACCACCAGAAGGGCATTCTTCAAGTCTGAGCAGCTGGAGTGTCCTGTGAAGTGTTGTGAATAGGTGACGCAAAAACGGGACCTCTTGCAGTTGTTGCAAAGCTCTCTTGAAGTTATCTCCAGTATTTAAACACGTGCATAACTGTAATTTCATTCCATTCTCCAGCGACTGCTGGGTCTTAAGCGGAGGTGTCTCGAGCCTTTGCCATGCTAAACGCAAGGTAATGCTAACGGATGAGAGCTACTACTAGTCACTGTAGTTGTCTAACGTAACATGTCTAACTATTGTAGCATCTAGTAGGTTGCCATTCTTCTCACCTGCTATGCCTCCTGCAAGATTTTGCACATTAACAGTTGAATTTAGCCCATTATGTTGGGTCCtgatggttttattttttgtccatgAGGTGGAATCGCTAAGCTAGCCAGCTAACCTAAATACTCACTACATATAACCATTACACAGTTTCACTTGCCTCAGAACAACTAATCTCCCTAGTGGTTTTAGATAAGATTATGGGTACAACAGCCGAACGGCTGACAGAATAGTTAACAAAACTACACTCTTTTGAAAGAAAGACTGTGTGAAACTTTAGCTTAGCTAGAGTTCGATATGTGAAGGTTGGCCCCTAGAGAGAGGCATCTCTAGGCTCCATGTTTATTCTTATATTAGGACAAGCCAAGCTACTGAAGTGAACAGAtatgcactctctctctttcttctatttctctggttttctaTCCATGTTAAACTTCCTACCTGCTCAAACAACAAGCTGCGGGGTTCCTCATGGTGACCAGTGTTCGCGCCCCTTTGATTACAGTGTGTGGTTTagattatttgtatttttgtattttatgttttttatgtttaggtgttatatatattatttccttATTAGGGTTTTCCTTTTCGTATGGCTGTAGCGCTGCGCTACATGTCTTTACTGTTAACATGGGAAATGCAGCGGACCAATTGATTTAGTGTATGTTGTAGccttgttgtttgttttagcaTATAAGCAGATTAAAAACTACTGCCTGGGCAAAACCATCCATTTTTATTTGGGAAATGAGTGTGGTGCTGTTTTATGAAAAAGGGGCGACGTCTTTTgttagtatgtatgtatgtatgtatgtaagtaagtaagtatgagtgtgggtgtgtgtcctAACAGTTGAGCGCAAGAAGTTAAATAACACTATTTGATGAACTTTTATGTTGAGGCTCCTGCCTGTATCGCTGGACTCTACAAGAATTAACAACAACTTTTCCGACGCACTGCGGGAGAACGCCCATTCCTTAATATTGCTTTTCTTTTGAAGCGGTTTACAGAACTTCCATAgcatgtgtttttaatttacgAGTATGTGTGCATTTTAACACGGTTACACATTAATGCCTGAGACCGGTAAAGTGGCAAACAACATCACAATATCAAGTTTGTATATGGAAATATGTTATTAAAACTCTTAAATCCTA

Function

GO: NA

KEGG:

id description
K24741 WDR20; WD repeat-containing protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6168 lncRNA upstream 61421 18314554 ~ 18328007 (+) True G4591
TU6158 lncRNA upstream 83176 18258571 ~ 18306252 (+) False G4582
TU6164 lncRNA upstream 83279 18305358 ~ 18306149 (+) True G4587
TU6166 lncRNA upstream 87280 18298516 ~ 18302148 (+) True G4589
TU6109 lncRNA upstream 108815 18212156 ~ 18280613 (+) False G4542
TU6094 lncRNA downstream 11676 18411814 ~ 18420955 (+) False LOC103034503
TU6201 lncRNA downstream 316823 18716961 ~ 18717640 (+) True G4608
TU6204 lncRNA downstream 356622 18756760 ~ 18758132 (+) True G4611
TU6187 lncRNA downstream 377865 18778003 ~ 18778514 (+) True G4601
TU6213 lncRNA downstream 406386 18806524 ~ 18806901 (+) True G4614
XM_022669255.1 mRNA upstream 3109 18332339 ~ 18386319 (+) True LOC103036794
XM_015601482.2 mRNA upstream 108399 18274825 ~ 18281029 (+) True LOC103033229
XM_007233947.3 mRNA upstream 133085 18250923 ~ 18256343 (+) True LOC103032687
XM_022669160.1 mRNA upstream 222751 18138024 ~ 18166677 (+) False sidt2
XM_015601483.2 mRNA downstream 6981 18407119 ~ 18420970 (+) True LOC103034503
XM_007233954.3 mRNA downstream 86868 18487006 ~ 18499131 (+) True LOC103035466
XM_022669310.1 mRNA downstream 266741 18666879 ~ 18870819 (+) True fat3
XM_022669322.1 mRNA downstream 505508 18905646 ~ 18929820 (+) True LOC103038796
XM_007231017.3 mRNA downstream 668325 19068463 ~ 19101318 (+) True LOC103030891
TU6119 other upstream 315765 18071964 ~ 18073663 (+) True G4550
TU5717 other upstream 1766359 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1766688 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1843574 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 3227154 15072840 ~ 15162274 (+) False LOC103023550
trnaw-cca other downstream 916 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 3567 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 359237 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 359237 18759375 ~ 18759858 (+) False G4612
TU6211 other downstream 359237 18759375 ~ 18759858 (+) False G4612

Expression Profile