RNA id: XM_007234491.3


Basic Information

Item Value
RNA id XM_007234491.3
length 3203
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103046499
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12288119 ~ 12602536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCAGGGCACGGGCGGCTGGCACTGTCGCGCGGAGCGTGTGCGTGCGGTGTGTctgcctgtgtgcgcgtttgtgtgtgcgtgtgtgcgcgtgtgcgcAGACTGTAACGTGCGCGAGCGCGTGCATCGCTAGCTACGTGCTGGTGTGTGTCCGGAGCTCCAGTGACGGCAGCGTGGCCTCCGCTCCGCGCGCCTGACCGACCCCGGGAGGGTGGGAAACGTTTGAGCGGCACCGCGTCCGCGCGCAGACCCCCGTTCCTTTGCTGGATAAGCAGCCCATCGCGAGACGGACGTGCGGGAGCGTGCTCGGCTGAGCCAAGcgagaagcagaagaagcagaagatgatgatgctgcAACGGCACTTGCTGCTCGTGCTCTACAGCATCTGCGGGACTGTCATTAAAGtttCAGAGGCGGCgacaaaaaacaaagcaaaagGCAGCCAGGGGCAGTTTCCCATCACCCAGAATGTGACGGTAGTGGAGGGCAGCACGGCCAACATGACCTGCCGTGTGGATTACAATGATAACACCTCCCTCCAGTGGTCAAACCCTGCACAGCAGACGCTCTTCTTCGGGGACAAGAAAGCACTGAGGGATAACCGGATCGAGCTGGTCCGAGCTTCGTGGAAGGAGTTGACCATCAGCATCAGTGAAGTGACTCTGTCAGATGAGGGACAGTATACGTGTTCACTCTTCACCATGCCCGTCAAGACCTCCAAGGCCTTCCTCACAGTGCTGGgAGTACCAGAGAAGCCAGAAATTATTGGCTTCTCGAGACCTGCTGTGGAAGGTGAGGATGTCACACTTACATGCATAACGACTGGGAGCAAACCAGCTGCTGATATCCGATGGTTCAGGAATGACAAGGAGGTGCAAGGTGTGAAGGAGGTGAACGCCACTGGGAGGTCATTCACAGTGAGGAGCGCTGTGCACCTCCGGGTGGACAGGAAGGACGACGGAGCGGCGTACACCTGCAGCGTGGAGCACGTAGCTCTGAACTCAACTCCTCACCAAGTCACAGAGGTGCTGGAGGTCCACTACGCTCCTAAGGTAGAGATTGTACACTCTTTAATAGTGCCACAGGAAGGACAGTACTTCAAACTGGAGTGTGTATCCAAAGGCAACCCCTTGCCTGAACCAGTGGTATGGACAAAAGACGGTGGGGAGCTTCCTGACGTTGAGCGAATGATCGTGGAGGGCAGAGAATTAATCATCACAACACTCAATAAAACAGACAATGGCACGTATCGCTGCGAGGCCAGCAACCACCTTGGGACCAACAGCGACGAATATGTGCTGTTTGTATACGCCAAAGACTTACCAGGTACCACAGATCCCAACGCGCTGACTCAGCAAGGCCCCGACCACGCGCTGATCGGCGGAGTGGTGGCCGTGGTGGTCTTCATCACCCTGTGCTTCATCATCGTCCTGGGCCGCTATCTGGCCAGACATAAAGGGACATACTTAACCAATGAGGCCAAAGGAGCAGAGGACGCCCCTGACGCAGACACTGCCATCATCAATGCGGAGGGGAACCACGCACAtgcagaggaaaagaaagaATATTACCAGGGAGCGGCAAGAAATGTGGTTCATCTCAAGTCGGAAAACCTTGGCTTTGCCAATAATTACGCTTTAAGGGAAGAATATGTGCGATGCATAATGtgaatatttattgtttgtcaattattttatttatttctttgattttattatttttatttttttcaatgatCCATTGTGAAAGTGGTTGTTCTCTGAAGTGTACTCCATAACAAGAATGTTGTATAAAGACAAAAGAACGGACATGGATATTTATGTAATATACCATATagataccaaaaaaaaataataataaaaaaattgacaatatacaatataaaaaaaaagtggagaaAAACAATTGAAAGCACAATTGACGATTGTTCCTGACCTAATGGAACTCACATACACTGGTTATTACTGTTCATATCTGTCTGTATAGTCTTGCACTGTTTATATCTGGCCctgattcttttctttttaatgtctaAAGATGTTGTTTAGAACATATAAGCACAAAGTCATTGTTAAATGTCATTGGCTTAGACAGTCtcaggatgaaaaaaaaaaatggagcctaattgtttttgattttggattcattttaattcattttaattaatgaacGAAGTGGTTTCCTCCATCTGTACTGTTGGACCATCTGAACTGGACATTCGTTCAACATGTGAAGATTAAGATGGGCTCATTTCCACACTGCAGTTCCATTACtcagtatttattttactgattgTCCCCTCGCTAATATTGCTGTAAATTACTTTGCTGAAGTGATTATTGGTggaaaatattgttaaaatatggGATTCCATATATGAACATTTGTATATTAGTCAATATAGAGCAGGCCTTCTGGACACAGGTTAAGCCTACTCTTGGATTCGTTAAATTATGGGAAATAATCAGACTGGGTAAACTGGTTTACTCAAGGACTTAATCACTTAATCTGTGTCCTGAAAATCGTCTCGTAGTAATTTAAAGTGTTCCATACTTTTATAATTACACTCACATTCTCATAAGTAACGAATATAAttctgttttgtcttttttattatttgtttttagcaCAAAGCATGTATATAATgtgaataattcagtatttagtaatttgtttatttaattgaatttgaAACCTTCattgttcttcttcttgttcttttgTGCAAATTTCATGTTTGTACGTCTCCTTTAGCTTCACATCACGGCTTAATACTTTTGGGAAAACTGATGGACAAATACAatgtattattatgattatgattattatcAGTGTGCTTTTATAAGCTTGTGAGTaggatgagttttttttttcttttctttttcatgaGAAGTTCAGAACAATCACCATTATTGCCTTTGTGTTTGCAACAAAACATATAACCCCCGAAGCACTGCTGAATCGGgcagtttttaaaacatgtttccaATGTTCATACTTTACCCCACTATTTATAACTTCAGATAGAGTTTAGACATTTTGTAAGAACCATTAATTTTCAtttgctcttctttttttttttggctatatGAGAAAATGTGTGAAGTTTGCttttacagtattaaatatCCATTTTCCAGACTATGCCTctgtaagacaaaaaaaatggaaaagatCTCAGAGAGTAAAATATGCACAAACATG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06782 CADM2, IGSF4D, NECL3; cell adhesion molecule 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4166 lncRNA upstream 35507 12246977 ~ 12252612 (+) True G3179
TU4082 lncRNA upstream 179083 12106391 ~ 12109036 (+) True G3129
XR_002652018.1 lncRNA upstream 329654 11958075 ~ 11958465 (+) True LOC111196183
TU4042 lncRNA upstream 360869 11924450 ~ 11927250 (+) False G3096
TU3897 lncRNA upstream 534008 11731522 ~ 11754111 (+) True G2983
TU4240 lncRNA downstream 112082 12714618 ~ 12720840 (+) True G3232
XR_002652336.1 lncRNA downstream 387049 12989585 ~ 12992123 (+) True LOC111197033
XR_002652330.1 lncRNA downstream 388283 12990819 ~ 12992123 (+) False LOC111197033
TU4352 lncRNA downstream 396509 12999045 ~ 12999446 (+) True G3323
TU4378 lncRNA downstream 473061 13075597 ~ 13162587 (+) True G3342
XM_022685327.1 mRNA upstream 377588 11884302 ~ 11910531 (+) True LOC103027225
XM_007232346.3 mRNA upstream 408049 11876926 ~ 11880070 (+) True LOC103026933
XM_022685259.1 mRNA upstream 415778 11851902 ~ 11872341 (+) True LOC103031523
XM_022685272.1 mRNA upstream 415778 11851903 ~ 11872341 (+) False LOC103031523
XM_022685105.1 mRNA upstream 444198 11818353 ~ 11843921 (+) False LOC103031217
XM_007234499.3 mRNA downstream 20928 12623464 ~ 12638259 (+) True LOC103047626
XM_007234504.2 mRNA downstream 38629 12641165 ~ 12668769 (+) True mipep
XM_007234505.3 mRNA downstream 105673 12708209 ~ 12753900 (+) True sacs
XM_007234506.3 mRNA downstream 105673 12708209 ~ 12753900 (+) False sacs
XM_007234508.3 mRNA downstream 186365 12788901 ~ 12793303 (+) True trappc4
TU4041 other upstream 360869 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 999273 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 1008960 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 2545654 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 2617994 9631865 ~ 9670125 (+) True G2509
TU4335 other downstream 380089 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 2358637 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 2436019 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 2443777 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 2470304 15072840 ~ 15162274 (+) False LOC103023550

Expression Profile