RNA id: XM_007234504.2


Basic Information

Item Value
RNA id XM_007234504.2
length 3425
RNA type mRNA
GC content 0.45
exon number 19
gene id mipep
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12641165 ~ 12668769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGTGTCTGTAGAAGAAGAGGCTGAGTGGAGGTGGTGTGCTGTGGGTCAGCTGGGGTACAGTAGCTGTTTTCTCCTGAATAACCTTTATCAGCATAACAGCGGTCAGCGACACTCAGCTGTGATAATGACCTGAGAGAGCTCACTGTGGAGATATTAGTGTACTAGTGTACAGGAGCTGATCTGCGCCTCactttgtgtgtgagtgtgtgtgttttcacgtGTGTAacatgtgtaagtgtgtagctGTAGAGCCAAGCCCCGCGTGCAGTGTTATCATTAGTGCAGTCAGGGTCCAGTGAATCAGCTCGGTTATATACATTTGTTAGCTGCTTAGCGGATATTAGTTAGCCGGTGTGGTTGGGGGGCTGTGAGGGTCTCGGTCATGTCTGTGTATAACCCGCTGTTGTTGAGGCTGCTGAGGGTGAGGAGCAGAGCAGTCCTCAGGCTGGGGAGGAAGGTCACCACCTGGTCACCTGTCGGAGCTGCGTTTAACGCGCAGGCGGTCCGGAGGCCCGAGCTCTTCAACAAGAACGTGGGCCTGTTTGGTGTCCCTGAGCTGAGCTCCACAGAGGGGTTTGAGGTGGTCCAGAAGAGAGCTCTACAGGAGACTGAGCAGCTCGTGGAGAAAGCCTGCAGTACTCCACCTGGTGCTGTGACTGTGGAGACCTTTGACAAGCTGTCTGACAGTTTATGCAGAGTGGCTGATCTGgcAGACTTCATCAAGGTGGCCCATCCAGATCCACAGTATCGAGAAGCAGCAGAGAAGACATGCATAAATATTGGCACTACAGTGGAGAAGCTCAACACAAATGTTGAGTTATGTAAGAGTTTAAAGGACCTCCTGGACAATAAAGAGCTCATGGCCAAGCTTGATCCAGAAACAAGGAGAGTGGCTGAGCTGTTCATGTTTGACTTTGAGATAAGTGGAATCCACCTGGATAAAAAACAGaGGAAGGAGGCCGTCAACTTAAATGTTCAACTCTTGGATCTGAATAATCAGTTCTTAATGGGCTGCCATATGCCCAACAGAATAGATAAAAAAGCTCTGCCTAAACACATTCACCAGCACTTTACCAATGAAGGGAGTTATATTCAGATTGGAGGATTACATGCTGATGCACCTGATGATCTGGTTCGAGAAATTGCCTATAGGATTTTTCTGTATCCAAATGAAGAAATGATGGGCACCCTTGAAGAACTGCTGTCATGTAGAAATAAACTGGCTAAGCTGGTTGGTTATGAGTCTTTTGCACACAGAGCATTAAAAGGAACCATGGCTAAAAACCCAGACACTGTGATGAACTTCCTACAGCTTCTGACAGACAAACTCAAAGACAGAACTGAAAAAGACTTTGAAATGATGAAAGATATGAAGACTAAATTCAATCCCAGAAATCCAGCTGTAATGCCATGGGACCACCCATACCTGAGTGGGGTTATACGTGCTGAGAGGTTTAACATTGAGCCAAGTCTCTACAGTCCTTACTTCTCTCTTGGAGCCTGTATGGAGGGTCTGAACAGTCTGTTCACGCAGCTCTTCGGTGTGTCACTTCTGTCCGAACAGCCCAGTGCAGGAGAGGTGTGGAACGAGGACGTACGCAAGCTGGCAGTCGTCCACGAAACAGAAGGACTGATGGGATACATCTACTGTGACTTCTTCTATAGACCTGATAAACCTCatcagGACTGCCATTTCACTATCCGTGGAGGGCGCCTCCTGGACGATGGTCAGTACCAGCTGCCTGTAGTTGTGCTGATGCTGAACCTCCCTTCTCCAACCCGAAGTGCCCCCACGCTCCTCACACCAGCTATGATGGAGAACCTGTTCCATGAGATGGGCCATGCCATGCACTCAATGCTTGGGCGCACTCGCTATCAGCATGTGACTGGAACAAGGTGTGCTACTGATTTTGCAGAAGTGCCTTCAATTTTAATGGAGTACTTTGCTGCTGATTATCGGGTCATCAACCAGTTTGCTCGTCACTATCAGACAGGACagCCTTTACCTCAGAGCATGGTAGCTCGACTCTGTGAGTCCAAGAAGGTGTGCGGTGCTGCTGATACTCAACTTCAGATTTTCTATGCAATTTTGGATCAGGTTTATCATGGTAAACCTCAAAGCCGATCAACAACAGATATCTTGATGGATATGCAACAGAAATACTATGGGTTGCCTTATGTTCCTAACACAGCATGGCAGCTGAGGTTCAGTCACCTCATAGGCTATGGAGCGAAGTACTACTCTTACCTGATGTCTAGAGCTGTGGCCTCCATGGTGTGGAGGCAGTGTTTCCACAAGGACCCCTTGAACAGGGAAAATGGAGAACGCTACAGGAGAGAGATGCTGGCCCATGGGGGAGGAAAGGAGCCTATGCTGATGGTGGAAGGCATGTTGCAGAAAAGGCCATCCACAGAAGATTTTGTTGATGCCTTGGTCTCTGACCTCGATCCAGACTTTGAGACATTCATCATGGACTCGGAAGGCTAAAGGGGAAAGTCTTAAATCCACCATCTTCTGAAGGGAAAGATTAGTCCTGTTAGTCACTCTTGAATTCTATCATCTGCTTTGTAATGAACTTCCCACCTTAATCCTTAATTATTTTGGTTTACTGGAATATTCTTTTATCATATTTCATTCCAGATGCTGTCAATCATCCAACTTTATATctaaattatcttttttttttaagtgtacaaCAGGAGATGCTTTTGGGCATGTGTTTACAGAGGGAGATGTTCTGGTGATGGTTTGAGTCCAGAGTGTTGTAGCaacattagcttagcatctGCTATTTTAAACTACAAAAGCAAACTTAAGATATTCAGACATGTCTTGGCCGATCGACTGCATCTTGGAGTGAACTGTGATGAATCATTTTTGCCAAACTATTTCTTTAACAAACAAGGGAGTCTAACAAGTGGAATCAGGTGCTGTAGTATGTGGTTGGAACAGCTACAGGCTATGTGCATGAGGACATGAGGACATTTTTGTATTCTATTAATTTATGGATAACCTGTGTACAAGTCTTGAACTGAGATTTATAGATTCTTTTTCTTACCAATTCTTTTTATAGAATGAGTTTTTGCAATCAACCATGTTATGCAGTTTGTTTTTGAAGCTcaaagcactgttttttttgttttttgtttttttaaggagCATTCCACAATTCACAATTCTAATCCGTGTTTAATATCCGTCCTCAAGGTCCAAGACTCCTGCATCCTTTTACCCAAAAGCCACTAAGACATGTTAACACAAATTCCGtgcaagcttgttttttttccagctaCAGAGTACCTGTGGAATGTTGGATAAATTCCTCCAAACTGTCTTGATGGTTAGGAAGTGCACACATCATGGATTTTATATGGAACACTTCTGTGAAGAATTTCCTGGCGActtccgtaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01410 MIPEP; mitochondrial intermediate peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4166 lncRNA upstream 388553 12246977 ~ 12252612 (+) True G3179
TU4082 lncRNA upstream 532129 12106391 ~ 12109036 (+) True G3129
XR_002652018.1 lncRNA upstream 682700 11958075 ~ 11958465 (+) True LOC111196183
TU4042 lncRNA upstream 713915 11924450 ~ 11927250 (+) False G3096
TU3897 lncRNA upstream 887054 11731522 ~ 11754111 (+) True G2983
TU4240 lncRNA downstream 45849 12714618 ~ 12720840 (+) True G3232
XR_002652336.1 lncRNA downstream 320816 12989585 ~ 12992123 (+) True LOC111197033
XR_002652330.1 lncRNA downstream 322050 12990819 ~ 12992123 (+) False LOC111197033
TU4352 lncRNA downstream 330276 12999045 ~ 12999446 (+) True G3323
TU4378 lncRNA downstream 406828 13075597 ~ 13162587 (+) True G3342
XM_007234499.3 mRNA upstream 2906 12623464 ~ 12638259 (+) True LOC103047626
XM_007234491.3 mRNA upstream 38629 12288119 ~ 12602536 (+) True LOC103046499
XM_007234505.3 mRNA downstream 39440 12708209 ~ 12753900 (+) True sacs
XM_007234506.3 mRNA downstream 39440 12708209 ~ 12753900 (+) False sacs
XM_007234508.3 mRNA downstream 120132 12788901 ~ 12793303 (+) True trappc4
XM_007260901.3 mRNA downstream 334768 13003537 ~ 13028805 (+) True LOC103023132
XM_022686557.1 mRNA downstream 345836 13014605 ~ 13028805 (+) False LOC103023132
TU4041 other upstream 713915 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 1352319 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 1362006 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 2898700 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 2971040 9631865 ~ 9670125 (+) True G2509
TU4335 other downstream 313856 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 2292404 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 2369786 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 2377544 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 2404071 15072840 ~ 15162274 (+) False LOC103023550

Expression Profile