RNA id: XM_007236834.3


Basic Information

Item Value
RNA id XM_007236834.3
length 5076
RNA type mRNA
GC content 0.42
exon number 14
gene id clip3
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14731107 ~ 14753636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGGCGAGGCAGCAGCGTCCAGTGttatccatccctccatccctccatctatctatctacccatcCTCTTAACCGTTTCTGTGAGTCAGAGCTGAAAACAACGACTAGAGAGAGAACCGGCGCAGTGGATTCTGCGGCTTGTAATCAGGCCCACATAAAACAGCATGACTAAAGAGGACACCACTGAGGTAGAGGAGGCTCAGCCCCCCTCTGAGTTCACCAGCCCCGTCCATGAGCCCCGCAAGAAACCCATGGTCCACCCTTCTGCCCAGGCCCCTCTCCCCAAAGATTACACATTCACATTCTTTGATCCGAATGATCCGGCCTGTTTGGAGATTCTGACAGATCCTCGCACCACCATCCCAGAGCTTTTTGCTATCATCCGACAGTGGGTCCCACAAGTCCAGCACAAGATTGACATCATCGGTGAAGAGATATTAAAGCGTGGTTGCCATGTCAATGACCGTGATGGGCTGACAGACATGACCCTCCTGCACTACAGCTGCAAAGCAGGAGCTCATGGAGTGGGTGACCCCGAGGCTTCACTTCGACTGACAAATCAGCTGATAGCTTTGGGTGCAGATGTGAGTCTGCGCAGCCGCTGGACTAACATGAACGCCCTTCACTACGCCGCGTACTTCGATGTTCCTGAGCTGATCCGGGTTTTGCTCAAAGCTTCTAAGCCTAGAGtgcTGAACTCTACCTGCAGCGACTTCTATCACGGCACTGCCCTGCACATCGCCGCCTCCAACCTCTGCCTTGGAGCTGTCAAGTGTCTGCTAGAGCACGGAGCCAACCCCACTGTCAGGAATGATAAGGGCCAGGGCCCTGCTGAGGTGGTTCCCGACCCCATGGATATGAGTTTGGATAAAGCAGAGGCGGCAATGGTGGCTAAAGAGCTGAAGCAGCTGCTGTTGGATGCGGTGCCACTCAGCTGTAACCTTCCCCGCGTCACCCTGCCCAATTACGACAACATCCCTGGCAACCTCATGCTCTCCTCCCTCGGTCTCAAGCTGGGTGACCGCGTCTGCCTGGACGACATGAAGgCGGGCACCCTGCGTTTTTGTGGAACTACTGAGTTTGCCAGTGGTCAGTGGGTGGGCATTGAGCTGGATGAGCCAGAAGGCAAGAACGACGGGAGCGTGGGCGGGGTCCGCTACTTTATCTGCCCACCCAAACTGGGAATCTTTGCCCCAGTTTCCAAAATCAACAAAGCTGTCGATCAGACCCCCTCCTCAGTCACCTCCACACCCAAAACCCCCCGCATGGACTTCTCCCGCGTCACTGGCAAGATTAAGAAAGACAAGAAAGAGAAGGAACGAGAGAAGAACATGAGGAAGAAGTCTCTGTCAGTGGCCAGTTTGGATCCTGATGGAGTGAAAGTTGAAGTGGGAGACCAGGTTTTGGTGGCTGGACAGAAGCAGGGAATCGTCCGCTTTTACGGCAAGACAGACTTTGCACCAGGCTACTGGTTTGGTGTGGAATTGGAGCAGGCCACTGGAAAGCATGATGGCTCTGTATTTGGTGTTCGCTACTTTACCTGCCTCCCTAAATATGGAGTATTCGCTCCGCCATCCCGTGTTCAGAGAATTGGAGGACCAAAGGAATCCCAGGGTGACGGGACACTGGTGAAGAAAGTCCATCAGGTGACTATGGCCCAGCCGAAACGGAACTTCAATGCGGTGAGGTCTCCCAAAGACATCACATCCGAGAGCTCTTTATCCAGcAGGTTGCTGTTCTGTTGCTGGTTCCCTTGGATGCTCCGTGCGGAAATGCAATCCTAAACGTTTGGCTCACTACTTCTCCTAACCCATCTTTCTGTTCCTccccaaaaacaacaaaaggaTCCTCTCACTGTCTTTCCATCCTTCATTTGTGCTTTTCTCTAAAAATCCCACAGATTGTCGAAGGCACAACTGTGGTGACCCCCGTCTCCAAACCTTCCCCTTTGACTGCAGTTAGCAAAAACTAGTGCCTTGTAAAGTAACTAACGTCCTGCATTCCATTTGTTAAACgaacaataataatgaaaagaTGTTTCTTGAATTCTTAATTAGGGCAACATAACCCTGACAAAAGCCATTTGTTGGAACATAACCGATTTTTTAAGTTAAGGTGTCTTTTATGTTGTTGAAAATCACCCTAAAATGAAAGCCACAAAAACATACCAGTAAATGTTTTTGTGGgctttgcatgtgtgtgtttttgttttagaaaaacacagtttctgaatcttaGCCTAAAATATAtcatggctgctgctgctgctagagTGTGCACTCTTGTCTTATTTTCAGTATTGAATAGGGAACTAagcttttaaatgccttttcaTTAGTTTTCTGAGTACTTGATCATATTTAGATGGTTAATGTCTGTCTAAAAGATGTTGTCCAAGAACCTTGCAACTACCCGATCATTTAATCATATTGTGGTAAGAAAAAATGCAGATTACCTTTACATACGTTTAAGCTACCAGGGTGACagggaaaaaaagaatacaGGGTTTATTGTTTATATCTCACTTTTAATTGTCGTTCCCAGTGCAGTTCAGTGGATCATACCTGTATTGACCTGTATCTACTGTGCAGGCATGTGtacagtaacagtgtgtacATGTGGGTGGACATACTCTATGTGAGGCTGTACATTACCCTTAGTACATTGTCAGAAAATATTCaagatttatataataatcatGGGATTTTGTGCCATTGTTCATACTATAATCTGACCGATATATGGGTTtacaaatatatcaaataatatTGATGTGGCTTTATCTGTATCCTTTAAAATATCACCAATAATAACAGACCCACCAGGATTAAAGCTAAACAGAGTTGTACACACCCTCCATATATAACTATATTAGTGATACAAGCTGAATGAGGAAACTAAACACAGAATGCTGTCATGACGAGTGATAATCCATGTCAAATGTGTCCTTTTTGAGAGaattaatgacaaaaaaaataaaagaagttaAAGATGATAACGAtacacaaaaacattttgagtGACAACcatatgctattttatttttattatttaaaacagtagTATGCAAAAAGTTTACTCCTGGGTTCCCCCTGCAGTCAGTAAGTCATCCtaaaggacatgctttacacatgcatttctgggcaAGCTGAGAAATAAGGAACTCATCCAGTACAGTAAtgttacaggattttacacaaaaaagatTTGGGTTAGGCAGCATTATTTAGTCATGGTGAGCTTCACTAAATTTACATATGATGATGTGTGTTGATGTCCACacttttaaagctgttttatgATATAAAATGCTTTGTAATGTTGCTTTAAGATCATGGGTTTTGcagtttatttgagttaaagaaGCATGACAGTTATAAACAGGTAACCATGTcatgttatgtaataaaaatTGTTAATGATCGCTTGGCAATAATTATTGGCTAATACTGTTCATTACCAGTTTTTAGCCCCTAATATTGGTATCAGtgtcaaaaaaaatgtttatatcagTAAAGGTCCTGGTTAATATTTAGCTGCCCAATGGGAACACATATACTTAAACTAGTCCACCTAATGATAAATTGGCAGTAAATCTGACGGTATATTTCAGCTGTTGTAATTCAGTGACAGTAGCATCAGATACTTGTTAGGtgaaagttttaaaaacacacttaaatataaTGTAGCCATTACCCAGGTCATCCAGCAAGTCCTTGATATTATCTAAAATACAGTTCAATTCCTGCCGTGTTCCTCTGCCTGATCCTCCTCTTTTCCTGTATCTCGTTTCAGTTTAAATAGGTTTTTGTAAATGATCGACTTCAGCAGCTCCAATAGTCAGAAAAGTATGTGATTATATCTGTCAACAagtgtaaaaatgaagaaaaagagcAATATCTAATCTACGTCAACTTGCTATGTGAATATGGGTGGTGTCTTTGTCTAGCACACAGCATGCGTAAGAAAAGCTCCAGTCACTTTCTGCTACTTTCCCCTCACTGATTTAAGCTGCTTTAGACTCAGTTCTCTTAACTATACCTTCCTTTATCACAGGCAGGATTAGGGGACATTAACTGCCTGATCCTAGGGATGCAGCTATTGGCAGACTGTGagcaagaaaaaaacatcaggCATTGCTTGTGCACTCTGTGTAACACCTTTTCTGGGAGCACCCTGACGAGCACTGCAGAACAAGGAGAATGGAAAAAATGAACACCTACTGCGTAACAGAtctgtatgttttgttttttaagtctACATACTGCTAGTTAGTTATTCATATATTGTTGAATTTGTGTAGTGGTGCAATCATTGCCTCTGTAGTGATATAAGACTAAGACGAGTAAAAGGCATTTAAGACTGAGTGCAAAACTTAAACCATAACGTATAACCAGTAGTAAACATAATCGTTGAGTTTTGTGGAATCTGAcggtttgttttttattgttttagggTGACTTTTTAAGCTGTTACACAAGAtcactttcatttcatttcacagCCACTTCTGTTCTGATCACATTTCATTTCAGTGAATGGCAAAAGAGAAAGTGGGTGAGATATTTTAACTGTAATTACAGAGTGTATTTACTATCTCTCACTGTCTTGTCCCCTATACGTTCCCCTCTCCGTATCAgatcaaaataaaacacaggcaTTTTACGTAAAGTTACTTAGTTAATTCTCTTAGTCTACCCAGTTGTGTAGCTTATTTGGTATGATTAATTTGTAAACATATAATTTGTAAACATTTCTTCGTCCGaaaagatatattttaataattttactgtgtattttttaatgtgcaTCAGTCGGACAACCTGGTGACAATATCCATGTTTGTGTATTCATGTGAACTTCTATCTTCTGTAAGAAAGATTTGTGAGGACTGTAAATGCTGGAGTCAGTTCTGTTTAGCTAACTAGGCTACTGCATGCtgtctttatatataaaaaaacaacaacagtgcttttcttttttcagctgTGTAATAGCATGTTAATCCCCATAAACTTAAGAATTCTTCTCTGAATAATggatataacaataataaacatttgaTGTTTCGTAAA

Function

GO: NA

KEGG:

id description
K10423 CLIP3_4; CAP-Gly domain-containing linker protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4876 lncRNA upstream 137048 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 218318 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 226092 14444558 ~ 14505015 (+) False LOC103039352
TU4712 lncRNA upstream 295526 14414289 ~ 14435581 (+) False G3561
TU4710 lncRNA upstream 297932 14414289 ~ 14433175 (+) True G3561
TU4972 lncRNA downstream 88232 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA downstream 88232 14841868 ~ 14845624 (+) False LOC107197063
TU5077 lncRNA downstream 281130 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 282306 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 315794 15069430 ~ 15069802 (+) True G3794
XM_007236832.3 mRNA upstream 25388 14671512 ~ 14705719 (+) True LOC103041611
XM_007236823.3 mRNA upstream 227758 14446750 ~ 14503349 (+) True LOC103039352
XM_022663897.1 mRNA upstream 403988 14283621 ~ 14327119 (+) False ankrd13b
XM_007236836.3 mRNA downstream 13178 14766814 ~ 14802961 (+) True LOC103042749
XM_007236837.3 mRNA downstream 61918 14815554 ~ 14822099 (+) True LOC103043061
XM_022665613.1 mRNA downstream 86657 14840293 ~ 14845626 (+) True LOC107197063
XM_022665665.1 mRNA downstream 86659 14840295 ~ 14845626 (+) False LOC107197063
XM_007236838.3 mRNA downstream 93547 14847183 ~ 14859409 (+) True LOC103043366
TU4335 other upstream 1746838 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2803857 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3442261 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3451948 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 4988642 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 207537 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 284919 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 292677 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 319204 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1789306 16542942 ~ 16545854 (+) True G4221

Expression Profile