RNA id: XM_007236848.3


Basic Information

Item Value
RNA id XM_007236848.3
length 4128
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103046009
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14887299 ~ 14903497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATGCTGGCTCCGTGTCTCTCTCCTGCTGCACTCTGTCGGTCCGCCTGAAGGGTTACAGGAAGTTGGAGCCGCTGCCATGTTTAGCTGCTTTGTTGTAGATTTCTCGTAGGTTAGGtttcctgcagatttttttaagtgttgcaATGGAGCCGAGCTGGAGTTCATTTTTATTCCAGCAGGCAAATGAAGCGCTCCACCACCAGCATCAGGTGGGTCAAAACAGCCTGCTGCCCCTCCTCAACTCCGGAGCTGAACCACAAGACCAGAAGCCTGTGCTGCCCATCCCGCTGGACCTGAAGCCACCAGTCATCAACACTGAGCTCCTCAAGGACAATGTGGCTAGCGGCGtgggtggaggaggaggtggtggggGCGGAGGGGGTCCGGTGGTGATCAAGAAAGAGCCCAAGTCCAAGACGCCGTTTATTTGCGGGTACTGTAACAAAGCCTTCCGGGACAGCTATCACCTGCGGCGACACGAGTCATGCCACACGGGCATCAAGATGGTATCACGGCCCAGGAAGACGCCCACAGCGCCCACCATGGTGCCTCTCATCTCCACAGTGCCGCGGGACAATAATGGCAACCCTTCGTATGTGTCTACGGTAGCAGGCATCCTGACCACAGCCACCACCTCAGCCTCCACAGCAGTTGGGGTGATGTCTGTCCtgccccagcagcagcagcccagtGTGCCTAAAAAACCTCCCAAGCCGGTGAAGAAGAACCACGGCTGCGAGATGTGTGGCAAAGCCTTCCGAGACGTCTACCATCTAAACCGGCACAAGCTCTCGCATTCGGACGAAAAGCCTTTCGAGTGCCCCATCTGCCACCAGCGTTTTAAGAGGAAGGACCGCATGACCTACCATGTACGGTCACATGACGGGGGTGTGCATAAACCTTATATCTGCTCTGTTTGTGGAAAGGGCTTCTCCAGGCCAGATCATCTCAGCTGTCACGTTAAGCACGTTCACTCCACAGAACGACCTTTTAAATGCCAAGTAACGGCCTGCACGTCTGCTTTTGCTACCAAAGACCGTCTGCGCTCGCACATGATCCGCCACGAGGGCAAGGTTACCTGCAACATCTGCGGGAAAATGCTGAGCGCCGCCTATATCACCAGCCACCTGAAGACTCACGGCCAGGCCGGCTTCACTTCCCCCTGTAACAAAGACACTAACAATGTGTGCAACTCTGCCTCAGCCACGCCAGTCACTGCCTCGGCCGTCGCCAGCACTACATCCATGAACCGTGGTACAGTGAGCAACCCAGTCACCATTGCCTCCAACACAGTCAACATCACCAGCCTGCAGCACCCGGTCACCATCACTGCTCCAGTGAACATCGCCTCAGTCAATATACAAGCCACTGCGCCCATGAACATCGGCCATCCGGTGGCTATCACCACACCCATGTCCATGAACATCACTGGCCCTCTGAACATCGCCATGAGACCTATGGAGAGCATGCCGTTCCTCTCCCAGGTCCTGCCTTCTTCCCCACCATGGTAGAACCACAGGTTCCCCTCATACACATCCAACcctcatgttttattttaaaacattgtttccTGTTCTGGTCTTCCTTCAGTAGCATGGTTCCTGTCTGAAGAAAGGGCATGAAAGAGATGTGGGGTAGAAGCTACAAGCTAGTGCGGACAGACCGCAGCAGCAAAAACAAGAGCAGATGAGGAGAAGTGAAGGTCTAGTAGATGTTAGGAGGGTAAGCAGATCCAGACTGTCTAGACTCTAGAGTTTAGTAAAGGTGCTTAATAAAGGACATAAGTAGTAAATGCATGGAGTGGAGGCCTGACATACTTTGCTAGTGCCAGAAAATCTCTGCCAGTAGCCGTTTGAGGAGGAGCAATTGCTCCATCAAATAGCGTGTGTGACTGGTATTAACGGTTTTATGAACTGTGAGGATTTTATGAactgtttgttattttagcttgCTCATCAGTATTCTTTAGTTTTATGCATTGAGTTGTGTACTACAAAAGGGACAGAGGCTTCCATTTGTGGAAGatggttattttatatttttaacacagTACTATGTATGTAAGGAAAGTTGTTCTGAGGCGAAGTGGTTTTACAGATTTGGAAGCCACTTAAAACTGTAGCTGTTATTCTAGTTTCTAAGTAATGTTTTCAATAGCTGGGATATCCTTCCGCTTAGTGGGTGTTGGACATTACAGTAGTTATTTGACTCAAGTCTTGCACTGAGAACATATCTGATAGATGATATTCTGATGGCAGTATTAAgagataatgtgtttttttctttgtttgtatttgtttttaatggggTAAGCTCCCTATGTAGAAATCACCAGCATGCTGAAATCGATCTCCAAGACATTTTTCAGAGTGtcaattaagtttataggaatTATTTTCTAATCTTTTTCCATCTGTAAGGATGAGGGCTGTGTTCCTGTGGACCTTTGTTCAGGGTCTTGCTGAGAAAAAACCCAATCACGTGACACTCAACaaacttttatcttttttttttttttttttttttccattttgttgCTTATTTAATACACTAAACCGGTGTCTCCTTATTTTCTAAAACTTTAAGGTTACAGGTTATGTCCCAATcatttctgatttaaaaaaaaactgtccattATGAATGTGCTTCAGTTTGTtaagtgtagttttttttgttccttgattattgtgaaaccaaaactgcCATCTGTAGTTCAGAGTTTGTTGGCTTGGTCTTCATCCATGACACTCATCTCTGTTCCGCACGACCGTAGGATGTTAGTAATGAACCAAGGCAAAGTATTTCATCCATTATGGATGGCAAAAGCAATACCTAGGCTGAACTGCTAGCCCATTCCATTCCTTTTTGACTCTGATTTAGTTTGTAAATATTGCCCTCCTCATGAGTGTGAGCTCTGTGATTTAGGGGTAAGTCTGATCAGAGGTAAAGATCAGCTGAATGTGCGCATACTTTAGTCATGGCCTCAGTAGTGCGGTCATGGctcaaatattattttattttattatctaagACTGGTTTATCCTAATATTCTAATCCAACTGACCAGAAGGTTAGCAGCTTTCCTAGCAGAAATGACTATCTGTTATCAAAACTGGAATTGCTCCATTGTACTGGTCAGTTGCAATGTGAACGagtggctaaaaaaaaaagatccttAAAACCTCCTGTATGATTGGAATTCCCTTGCTACTAAGTACAACTTGTAGCCGCATTTCATTTGCGTACATTGCATTAACTTCCCaatgagaattttttttgtctgtctgtcaaaGTGTTGCCTTGTTTAACAGGGGTATATTGTTTTTGGATTAACTTTGAAAACTGGAATTTGAGGAATGGGACTGATGTGACTGGTTAAAATCATTACAGAACATTGGGTTTGGAGTATGCTTGTGCTATATGTTTGTCCCTCCACAGTGGCATTACTTCTGTGCCTGATCTAAAAATGTCTGAAAACGCCACTGTGGAATACTTAGAGTTTACCAAATGTGTGTGAAGATTTAAAACTGTTTTGATTTGCCGAAAGTCATGTATAAGGAATTATGAGTTTGTCATGAGGTTTTTCCGCaagtattgttttaatttttatttttttttatgccttATGCACCTACAGTATCTTTAAAAGAAACTTCTTTGATTTAAAAGTGAGGGAAAACCTTATTTTCCAGTTTGaattggagaatgaaactgtaGTGCAGTCCTTTTAAAATTTCTTTTGATGAATTGGCAAAACCATGTGAATGCCAGTGAATGTatatctttgtaaaaaaaaaaaaaaaataaaacaacaaaaaaaaaaacatttagctcAGAGGGTGTGGTAGTTATGTTAGATGTGcaaggaaaacaaaaacaagtaaaataaccttttataaaacattttgtattAGAACATTAACATTGATAATTTTGTATATATGAAGACTAGGCTTTTTTGGTTAGCAGAAATGTTAAACAttcctacatttttttaaatgtatgtatgtccAGAACAATTATGTAAACAAAATGCGCAATGTTTTATGTGCCTTTTATTTGGGTTgtctaaataaaagaaaattgtaAAACATGGATTTAGGTCATCCTTGCAACTTTAATCTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4972 lncRNA upstream 41675 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA upstream 41675 14841868 ~ 14845624 (+) False LOC107197063
TU4876 lncRNA upstream 293240 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 374510 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 382284 14444558 ~ 14505015 (+) False LOC103039352
TU5077 lncRNA downstream 131269 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 132445 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 165933 15069430 ~ 15069802 (+) True G3794
TU5093 lncRNA downstream 217237 15120734 ~ 15134707 (+) True G3800
TU5131 lncRNA downstream 351960 15255457 ~ 15255899 (+) True G3816
XM_015602301.2 mRNA upstream 6667 14875553 ~ 14880632 (+) True LOC103045400
XM_007236845.3 mRNA upstream 11822 14870734 ~ 14875477 (+) True LOC103045089
XM_007236844.3 mRNA upstream 18704 14859897 ~ 14868595 (+) True LOC103044784
XM_007236838.3 mRNA upstream 27890 14847183 ~ 14859409 (+) True LOC103043366
XM_022665774.1 mRNA upstream 27890 14847183 ~ 14859409 (+) False LOC103043366
XM_022666185.1 mRNA downstream 3286 14906783 ~ 14930747 (+) False LOC103046311
XM_022666151.1 mRNA downstream 3287 14906784 ~ 14930747 (+) False LOC103046311
XM_007236849.3 mRNA downstream 3288 14906785 ~ 14938834 (+) True LOC103046311
XM_007236851.3 mRNA downstream 37183 14940680 ~ 14955344 (+) True wsb1
XM_007236852.3 mRNA downstream 69492 14972989 ~ 15033659 (+) True LOC103047124
TU4335 other upstream 1903030 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2960049 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3598453 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3608140 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 5144834 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 57676 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 135058 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 142816 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 169343 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1639445 16542942 ~ 16545854 (+) True G4221

Expression Profile