RNA id: XM_007236851.3


Basic Information

Item Value
RNA id XM_007236851.3
length 3817
RNA type mRNA
GC content 0.43
exon number 9
gene id wsb1
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14940680 ~ 14955344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCGGACCAGCCGCGGCCATTAGATTAGACTGTACACAGACGGAGCGGAGAGACCGAGCGGAGCCCGAGACTCACAGATTCTTTATTTCCCTTTCTCCTCGTTGTTTTTTCCTAACGTGTTTTCACCCCGTTTCGTGTAATCCCGGTGGTTGTGTGTCGGTAGAGGGAGAGAGcgctgttattttagtgttatttttGGAGGAGTGTATGTTCGTACTCTAGGGCTGAACAGTAGCGCCGCTAACGCCTCTAACGTAGTGCCTACGTGTGTCCTCACGCATTCCTCCTCACAGAGCTGCACCGACACCCACTCCACTGATccgttttaaacaaaaaaaaaaagaggtttaattattttacctaCAGAGGCGTGCTTTAAAGGGACCCGTTTCTATTTAGATGGCAAGCTTCCCAGATTCTATCAACGAAAATGAAATAGGTAAAGCTAAGTTCATTGGTGAACTTTTAGCTCCTGTTGCTCCCTTTGACCAGAAGTCAGGACGGGAGACGTGGACTGTAGCTTTTGCACCTGATGGCTCCTATTTTGCTTGGTCTCAAGGACATCGCATTGTGAGACTTGTACCATGgtcaaaatgcataaaaaacttCTCTATGAGGAAGGAGGAACGGATAAATGGAGCTGGGCCCAGGCGACTGTCTCGTCAGGGCAGCGATGTTGCCCTAGTGCCTGGCGAGCCAAGGGAGCACACCATCGACTGCGGTGACATTGTCTGGGGTCTCGCCTTTGGCTCCTCTGTCCCTGAGAAGCAGAGTCGATGTGTGAACATCGAGTGGCACCGCTTTAAATTTGGCCAGGACCAACTGCTGCTGGCCACAGGCCTTAATAACGGGCGCATCAAAATCTGGGATGCCTATACAGGAAAACTTCTGCTGAACCTGATGGATCACACCGACATTGTACGAGATCTTACATTTGCTCCAGATGGCAGCCTGGTGCTGGTCTCTGCTTCCAGAGACAAGACACTTCGTGTTTGGGACCTCAAGGACGATGGTAACATGGTGAAAGTGCTGCGGGGCCATCAGAACTGGGTCTACTGCAGCGCCTTCTCGCCAGATTCCTCAGTGCTGTGCTCTGTGGGTGCTGGCAAATCGGTCTTCCTGTGGAACATGGATAAGTACACTATGATCCGCAAGCTGGAGGGCCACCATAACGACGTGGTGTCCTGCGAGTTTTCTCCTGATGGAGCCCTGCTGGCCACGGCCTCTTACGACACCCGTGTCATAGTGTGGGACCCTCATATGGGCACTGTATTATTGGAGTTGGGGCATCTATTCCCTCCTCCTTCACCCATATTTGCAGGTGGGGCAAATGACCGCTGGGTTCGCTCCGTGGCCTTCTGTCATGATGGTCAGCATATTGCCAGTATTACAGATGACCGGTTGGTGAGGTTCTGGAGTATAGATGAAAAGTCTCCTCAGGCTGTTGCATCGCTAACTAATGGGCTCTGCTGTGCCTTCTCTACGGACGGGAGCGTTTTAGCTGCTGGTTCACGTGATGGCAGTGTTCATTTCTGGTCATGTCCACGCAGCATTTCCAGTCTGCAACATCTGTGTCGCATGGCCCTGCGGAGAGTCCTCACCACGCAGCAGGTCTACACGCTGACCATCCCTCAGTGCATGCAGGATTACTTGGCCTACAGGAGCCTGTAGCCCAGTATGCACAAAACTGCACACTGACAAACCAATGAgactttatttgtaaaaaaaaaaaaaaaaaaaaaaaaaaatcttaacaaaaaaggacaaaaagaaaaatgaacctTAAATAGGTAGTAAAAAAaggtagaaaaagagaaaataaaaaataaaaatcttcgGCTCAAAGACCTCATGCTGTGCTTAATGAGGTcactgttttgtatttatttttttaagctgtattACTGCTTATAAACTTGCCTTTaagtacttttttcttttcaacaGTAAGgattcctttcttttttcttttttctttttcttttgttaaagtGATTGCTGCACCCTCACCCATATCAGGCAGTGGCCTTTAGACAGCATTATTATCAGCGTCACTTGAGCGACTTTTCTTCCTCTGTCttgctgtctcttttttttcttttcccagCACAACCTCTTGTACAAAACCTTATATTGCAACTTATATGACAGATAGAAAAAGTGAGAATCTCGTTTTTATGGCTGGAGATTTTGTTGTGGATTTGAATTGCTGATATCTGAGCTGAAAAGGTGCTTTCTCTTAAATGTATCGTGTATAGAGTGGTGACTTTCAGCAGTACAGTAAATGAGGTATTGAGGTAGCGTTAGAGTAGAAAGCTGCTCTTATTAAGTGCCATGGCTTACCTGGTCGATCGTAAAGTGAATTGAAAGGagtgaattaatgaataaattaattaatgaatggcCTATGTAAGCATACAAGGGTGCAAATCTTTAGCATGTTTGGTGTCTAGTTGAGGAGTGCATTTAGTAGTAGATCAGGCAGTGCCTCCCTTCAGTGTGCCTCTGTGATAGAAAAAAATCCCCAGTGCTGTACGCTTAATATCCACACTCAGATACTGCCTCGGTAACAACCTGAGAGAAACCGTAAGATCTCTTGGGATGTTTTTcccttattaaaaaatgtatattttttacttgtACAGAAATTTGTAAAGGAATTTTTTCatgttgtgtgtatatataaatatctaaatCTGCTCCCCCCTCACATCCCTCCTTTTTATTTCTCCTGAGCCTGAATACTGATGCTTGCGTTGCTTTGTGTATAGATCTCTTTCACTCTCCTGTGCTGTGAAACATTATTTCAAACATAATTTCAAGCAGAATGACCTGAATGAATGTCAGGCATACAGAAGAATGCTCTTGAGCGGAGTGTAGGTGAAAAAGTTGTAAGGGTATGGGTAGTTATTGAGATGAAATGTGAATGTTATTGCACCTCCATGCAGCTTGAAGCTTTTCTAAAGCTTCTGTCTgcctgtatttattgtatatttatatgtacagtGATTGACaattagaaaaaagaaagaatgccTGGCTTTAATCCTCTGAACTGGGCCAGCATGGTAGTGATGGAGATGTCATGTCTCATCTACCTCCTAGATTTGCCTGTGTAATGTGACATCACATGGAGGCTCAGAGTGTATTCACTTTGCTGTATGTAGATGGATAAATGGAGCTGTGACTGTGTAATGGGACTTCAATGTGGAGAATGGTTGCGGTTAGTGTGAGGATCAgttcgtatatatatatatttttttcctctctatGTGCAGTTCAACAATCCTGGCAATAAATTGCatatgttgtaaaaaaaaaagaaaaaaaaagtaatagctGATGCCAAAGACCTTGGTTTCTTTATCATATTTGGCACTCagtgtgttctttttttcccccacctTCCTTTCTTCTCATCTATATCTGGCTAAAACTTGAAAATCTTGTGCATATGTCTTACAGCTGTTTTTTTCCACATGCAAAGGAATGCTAAATAAGAATAGGCCTTTGTTTTCAAAAGCAAGTTTCTAGTTCTGTCTATGTATTAGGGAGAAAAGCGTTCTGACTCCACAGTGCCCTCTCAAAAAACTTCAGCACTGTCTACTGCTGCTATGGCATGAGCTAGTGGTCTTCAGTTTATTTCAGAAGCAAAACATTCAGTGTATCCTCATTCCTTTGCAGATAACTTCTCTCTAAATAATGCTGTACACAATAGTAGCAACTAAAGTAGTAGTCATGAGtcaaatgaatgtattttttctgttttttgtgtgtgtgtttttgtagttaaaataaaggcttCTTTCAAATGAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10341 WSB1; WD repeat and SOCS box-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4972 lncRNA upstream 95056 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA upstream 95056 14841868 ~ 14845624 (+) False LOC107197063
TU4876 lncRNA upstream 346621 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 427891 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 435665 14444558 ~ 14505015 (+) False LOC103039352
TU5077 lncRNA downstream 79422 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 80598 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 114086 15069430 ~ 15069802 (+) True G3794
TU5093 lncRNA downstream 165390 15120734 ~ 15134707 (+) True G3800
TU5131 lncRNA downstream 300113 15255457 ~ 15255899 (+) True G3816
XM_007236849.3 mRNA upstream 1846 14906785 ~ 14938834 (+) True LOC103046311
XM_022666185.1 mRNA upstream 9933 14906783 ~ 14930747 (+) False LOC103046311
XM_022666151.1 mRNA upstream 9933 14906784 ~ 14930747 (+) False LOC103046311
XM_007236848.3 mRNA upstream 37183 14887299 ~ 14903497 (+) True LOC103046009
XM_015602301.2 mRNA upstream 60048 14875553 ~ 14880632 (+) True LOC103045400
XM_007236852.3 mRNA downstream 17645 14972989 ~ 15033659 (+) True LOC103047124
XM_007236853.3 mRNA downstream 17646 14972990 ~ 15033659 (+) False LOC103047124
XM_022666639.1 mRNA downstream 41140 14996484 ~ 15033659 (+) False LOC103047124
XM_022666510.1 mRNA downstream 46131 15001475 ~ 15033659 (+) False LOC103047124
XM_022666565.1 mRNA downstream 47081 15002425 ~ 15033659 (+) False LOC103047124
TU4335 other upstream 1956411 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 3013430 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3651834 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3661521 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 5198215 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 5829 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 83211 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 90969 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 117496 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1587598 16542942 ~ 16545854 (+) True G4221

Expression Profile