RNA id: XM_022666565.1


Basic Information

Item Value
RNA id XM_022666565.1
length 5033
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC103047124
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14972989 ~ 15033659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtgctgctggagtttttaaacactgtgtacaCTCACTGTCCTCTACTCTATTAGAAACTCCTACCATGTAGATCATCTGTTGCTTTTCTTAATTAACTATAATTAATGTCATGTGTTGTGAACTTCAGGTTTTTCAAAAAGACCAGTTTGAAATACATGAACAGTAAATGAACAATTTGTTTCCTTACAATTTCTGAGTATTACTTTGGAATCGCCTTCTCTTCCACCCAACCGGTTTATGATCTGCTCTGTTGTACACTGTTTTTGGGGTTTAATgaggcttgagctggagctgctggagtttCGTGTGAAACTTCGAGTCAGGTGGCAGACAGGGAGGAACTCTTTTTATCAGTTGTGTTTATAGCCTGGTCGTTTAATGATTTGTGAACAGTCCTTTCTTCAGGGCTCGTATTCgtgactgtgtttgtgtgagtgtcaGCAGGGTGCTGTTTATGTATGATACATGTTTCTGGGTCTTGTGCGTGTGCTCGCCTGAGTATCACTCCCTACATTACATCAGCACTAACACACAGGCAGGAAGGGCATGTCCAGACAATATCTCGGTATAGGCAGTACCAGTGAAGCTGTCTCTGGATGCACTGCTGCAGATGTCCAGTGCTCAGGTGCAGGAGACCATGAGGAAACTAGGCTCTAGCACTGACGAGTGTTCTCGCATCACTGCTGCCCTCTCCTGCCTCAAGAGCGCCACTGACACAGGCCGCGAACTGAAGGATGAGGGAATTCCCTGGATAGTAGAACCTCCTCGGTGCAGCGTCGACACTTTGAACTCAGCTGAACATCTCTCCTGCTCCACTCAAAGCCCTCAGCCCTACAGCCCGAACCCAGCCAGCCGCCGGCCGGTCACTCCCTCAGGACCCTGCGCTCCccgttctgtctctgtgtccaCTGTCCCCTCCCTGGACTGCGCCTCTTTAAACTCTTATGATGGACTGGCTGACCCTTTCCTTCCCTCACCGCAACTGATTCGTCGACCTTTGGGTTTCGCATCGACTCCTCCCTTGACCCCGCCCACCTACAGGAATGCTCTGTTAAAGCCACCCCGCACACCCCCGCCCCCTTCCAACAGGATACGCATGCTCCTGCCGAACATTGCCCTGCCCCGCAGCAAAAGCCACACCCAGCTGGCCAACCGCGTGGATGAGCCTGCACCCAACAAGAATGGGAAGCAAATTAAGCTGCCTTTAAATGTACAAGTGAATGGTGGGGGCTATAATTATGAGGACTGGCCATCACCCTCACGCTCACCACTGCTCTCTGACTCGTCATCGTACACTGTACCAAACACACCCAACCTGGTGGACAGCCCCACACTGAGAACAGTCCCAAAGAGCTCTCCACATACTATACGGAGAGATTTTGGccttactttttcacacagGTTTTCCACCAAGTCATGGTTTTCCCAGACGTGTGAGGTGTGTAAGAAGTCCTTGATGTTTGGCgtaaaatgtaaacactgcAAgtTAAAGTGCCACAACAGGTGTACCAAAGAGGCACCTCAGTGCAAGCTACCTTTCCCAGTTTCACCAATCAGAAGAACAGAGTCAGTTCCTTCAGACATCAATAATAAGGTGGAACGGCTGCCTAATCAGTTTGGAACATTGCCGAAGACAATTAACAAAAAGgAACAGCCTCCATCTGTGAGTCAGCTGGACTCCAGCAGTAACCCATCCTCCACCACCTCGTCCACACCTTCATCACCTGCTGCTTTCAGCCAGAGTAACCCACCCAGCGCCACACCACCCCCCAACCCATCACCCAAAGGGCCTCGCGACAACCGCTTTAACTTCCCAGCTGCCTGCTACTTTCAGTTCAGACAACAGTTTATCTTCCCTGACGTATCTAGTTCCCCACATCCAGACAGCTGTCAGGACAAAGGAGAAACGGAGCAGGTGGTTGGTGAGCTGACCTCGCAGTCAGTGGCACAGGAAGAAGCTGTGAATGAGAATGTGAATGACGAAGTGGATCAGCAAGAAAATGAAAGACAAGATGATGCTGGTTCTGATGATGAAGGTGAAGGTGAAGGCGAGGGTGAAGAAGATGACTTGGATGACCTGCCCAGCTCCCGCGGTAGTCAGTGGAAGGGCCCCTTCTCACGCAAGCGCAGCCAGACCAGCGTATACCTGCAGGAGTGGCACGTGCCCTTCCACGAGCTGAACCTGGGGGAGCTGATAGGAAAGGGCCGATGGGGGAAGGTGTACCGGGGCCGCTGGCACGGAGAGGTGGCCGTGCGTCTGCTGGAGATAGATGGAAATAATCAAGGTCACCTGAAGCTCTTCAAGAAGGAAGTGATGAATTACCGGCAAACTCGGCACGAGAATGTGGTGCTGTTTATGGGAGCCTGCATGAACCCGCCACAGCTGGCTATCATTACGAGtttctgcaAGGGTCGGACGCTGTACTCTTTCGTCAGAGATTCTAAAAACTCACTTGACCTCAACAAGACGAGGCAGATCGCTCAGGAAATTGTAAAGGGAATGGGCTATCTTCATGCAAAGGAAATTGTGCACAAGGATTTGAAATCCAAGAACGTGTTTTACGACGCAAACAAAGTGGTCATCACAGATTTCGGTCTGTTTGGCATGTCTGGAGTGGTGCAAGAGGACAGgCGAGAGAATGAGCTGAAGCTGCCACACGGCTGGATCTATTACCTAGCTCCTGAGATTGTACGGAGAATGTGTCCTGGGAATGATGAGGAGCACTTGCCTTTCTCCAAAGCTGCTGATGTTTATGCTTTTGGCACTATTTGGTACGAGCTGCAGACACGAGACTGGCCTATTACTAACCAGCCAGCTGAGGCTGCAATCTGGCAACTGGGAAGTGGGGAAGGCATCAGGCAGCAGCTGAGACAGATCAGTCTAGGCAAGGAGGTTACGGATATCCTGTCAGCCTGCTGGTCCTTTGAGCTGGAAGACCGGCCTACTTTCTCGCAGCTCGCTGACCAGCTGGAGAAGCTTCCCAAGCTCAACCGCAGACTGTCTCACCCTGGACACTGGAAGTCAGCCGACTCGTGGCGTCATCACTGTTTGCGAGAGCACTGTAGTCAGGGCACACGCTCTCGCTGCCCTTACTCTTACAAATACGGCATTTAATGCATGGCTATAGCTAAACAATTGCATGGCTGGTCCATGAGAGAAACTGGTGGATCTCTGGTTTGCacatagtgttttatttttattaatattatttagaaATCAGTTCTTTGTCTGTGAATGCTGTTGGCTCTGATTCTGGGAGGGATGTTTGGAGAATATGACCGACTGCATTGTTGCCCTAAAGGAGTAACTTTATCTAAGATGCTGAAATGGCTAACAGTGAATAAATGGCTACCAATAACCATGATTGCTTACATTGTCCCTAATCGGTGcctattaattttcttttactgtGAGCAAGATCAGCATTTCTGACTGAGCTATTTCTTTATCATGAAATATCAGTCATTGCCCCAAATTCTTATCtcttattttaccattttaaaacacatttgtttGCAGTACCACACTtcgcaaagttttttttgtgctgttttgaATAACaccaataatactaataataataactacagTATGTGATGTTCATCATTGCACCTGCTGATTACATCATTTCTTTAAATTATCACTTGTTAATTTTCCTAAACACTGCAATACACAATGTTCAATATTCTCAACAATGAGAATGTACAAtttatgaacaaaagtattggggcaTGTTTCTGTATAATCTCCTTCTGTTGATTTTATACACCTCTGGTAGtggaacagaataaaacacagcaaataagaaaaaaaaatacagtgagtAATTGACTGGTTCAATGATGAATATTGTTGGGTTATTATTGTCATTAGAACTATTGTTAGTAGAATATGATTGTACTAGTGttcttaaaataatgtaaacctTTGCTTTTTAATTAAGCTGCTACAGTGATAATTTCAGATATGTCTTACACAGCTACCCGTTTGTGGGGGCCTAACATTCTGTATCCTCTTTATCAGCCCTGCCCGTCTCTTCCTATTTCCTGTGGCAGGATATAGTCAGAGTTCAACTATTCTCCACTGCTAACCTTCCAGCCTGCCTGAATCTCAATCTGAATGCAGAAAATCTTCTGAGTGCTGCTAGACTTAACTTTCTTTCATGCCTTATTGAATATTTTTAGCTGACATCTCTGCCATGCTTTTGCAGATCTTTTGcagtctgctatattaagctatatatatatatatatacaaaatacagaaatcaTATCATGTGAATGTGTTTCAGTTCTGGTTTCAgattgtttctgtttctgttttgggTCACGAGAAACAACAGCTACTCAAGTAAACACTCAAGTTACTGCAGGTCAGAGGTCTGCTATATTGGATTTAGGCATCATGGCAAATAAAGCTTTGTATACATATAAGATGTTCAGctgactttattaaaaaaattatattgttaAAGAGAAGGAACTGATAGCAGAAGGGAGGCAGAAGAATTTTGGGTGGGAAAGTCATTTGCTTAGTTgtgacaactttttttttgacaaaaatgtCTAAATAATTCTACCATGGCAGAAATGTGCACTCTGAGTTGAGtttaaaagagtgtgtgtgtgtgtgtgtgtgtgtgcctgtgtttgaatctgtgctgtgttttttttaagggtcTTTTTAACTGAATGTAAAGTTCCAGactttttttcagaattttatTCGACTGCAGTTTGTGAGCATTCACAGGGGAATTGTTTTGAtagagttttatttattgtacagttataatttctattattatttgtacAAACGTTTATAACAGCTTTCACTGTCACATTTGGAATAGGTactttatttccattttataGCTATTAACACAGGTATGTCCGTTTTGGACAAGTTTgacatgtatttttaatgtaagatttaatatttttgtacagCATGTCCAATGTGTAAGTAATGGtctcttttgttttctcttcaACTCTGAGAAACAATAAAGCCTAAATCAGTGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4972 lncRNA upstream 156801 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA upstream 156801 14841868 ~ 14845624 (+) False LOC107197063
TU4876 lncRNA upstream 408366 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 489636 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 497410 14444558 ~ 14505015 (+) False LOC103039352
TU5077 lncRNA downstream 1107 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 2283 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 35771 15069430 ~ 15069802 (+) True G3794
TU5093 lncRNA downstream 87075 15120734 ~ 15134707 (+) True G3800
TU5131 lncRNA downstream 221798 15255457 ~ 15255899 (+) True G3816
XM_007236851.3 mRNA upstream 47081 14940680 ~ 14955344 (+) True wsb1
XM_007236849.3 mRNA upstream 63591 14906785 ~ 14938834 (+) True LOC103046311
XM_022666185.1 mRNA upstream 71678 14906783 ~ 14930747 (+) False LOC103046311
XM_022666151.1 mRNA upstream 71678 14906784 ~ 14930747 (+) False LOC103046311
XM_007236848.3 mRNA upstream 98928 14887299 ~ 14903497 (+) True LOC103046009
XM_007236858.2 mRNA downstream 17815 15051474 ~ 15066217 (+) True LOC103021895
XM_007236859.2 mRNA downstream 17818 15051477 ~ 15066217 (+) False LOC103021895
XM_022666872.1 mRNA downstream 39181 15072840 ~ 15162956 (+) True LOC103023550
XM_022667039.1 mRNA downstream 39181 15072840 ~ 15162956 (+) False LOC103023550
XM_022667095.1 mRNA downstream 39182 15072841 ~ 15162956 (+) False LOC103023550
TU4998 other upstream 38842 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2018156 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 3075175 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3713579 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3723266 11273998 ~ 11279159 (+) False LOC103029949
TU5080 other downstream 4896 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 12654 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 39181 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1509283 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 1585387 16619046 ~ 16623069 (+) False G4219

Expression Profile