RNA id: XM_007236888.3


Basic Information

Item Value
RNA id XM_007236888.3
length 4476
RNA type mRNA
GC content 0.44
exon number 34
gene id LOC103029544
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15709480 ~ 15729311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGGTGTAAGCGGCCAGATTTCAGCATGATTGTCGGTGGGTTTTCTATACGGGAAGGGCTATTGTTAGTAGcctgttttttctttatccCTGTCAATGGAGAAACTTCAGGACCTTACTTCATGGTGACGTTTCCTGCGGTCATTGAGTCTGGCTCTGAGGCTAAACTGTGTGTGAGTCTCCTGAAGCCAAATGAAACTCTACAACTCACTGTTTACCTGCTTTACAACAACCAGAACAGAACACTTCTACAGGAGAGAGTGGAGGAAGAATTTCACCGCTGCTCTCAGTTTAAGGCTCCAAAGATTAAAGGACAGTCAGTGCAGGAGATCAGAGTAGAGGTCAAAGGTGAAAAGTTTCTGATGACAGAGACAAGAAAAGTTGTGTTTAAATCTTACAAACCGCTGACATTCATCCAGACTGATAAGCCAATCTACAATCCAGGCCAAAAAGTGAATTTCAGAATTGTCACTATGAATGCTAACTTTGTCCCACTGCGACAAGAGTACATTCTGATACTTCAGGACAGTAATAAAAACAGGATCGGGCAGTGGACGAATGTTTCCTCGACAGGCCTGATACTGCAGCTTTCTCACCAGCTGAACTCTGAGGCTTCTGAGGGCCAGTACACACTAAAGGCTATAATTGAGGATACGTGGATCACACACCActttacagtgaaaaaatacgTTCTGCCCAAGTTTGAGGTTACATTAAAAGCTCCAAAAGAACACAGTGTTGGTGAGGAGGAACTGAAGATAGAAGTTTGTGGAAAATACACGTTTGGACAGCCAGTACCCGGAACAGCACTGGTACAAGTGTGCCGGAAATCTAGACAGCGCTATTTTCAGGGTGTACAAGTGGTTTCACCATGCCTGTATGAAACACTAACGATGAGTGAGAATGGATGCGCATCTCATATATACAACATGTCTGTTTTCATCGGTTCCGAATTTGCTCACAATTTTAGAGAGTCTCTTGATATTGATGTTACAATGACTGAGGAAGGGACAGGTATTTCCATGGTCCAATCAGGAAGAACAGAATTTACTTTCGTCCTTGGTAAAGCTGAGTTTCTTGATTTACCAAAACACTTTGAACGAGACACTGTTATACAAGGAAAaATCAAAGTTACAACCCACAGTGGAAAACCAATTCCAAACAAGGAGGTTTATCTATTAAACGGTTATAGTTGGCAGTCAAAACTTCTTCTTAATCTTACTACGGATGATAATGGATTGGCCAGCTTCACAATTAATGCACCTGCTGACCCTGACACAGAGATTAGATTGCTGGCCAGTGTCTATCCGGAAAAGCACCACCGCGGATACAGGAAACCACAATTTGAGTATAGGGAAGCGCGTATACCACTCATTCAACCTGTCACGCCTTACAGTCCAGTGTACAGTGAATTAATAATTGAGAGCATAAAGGAACCGATTACATGTGATTCTGAAGTTACCATTAACGTAAAGTACTACATTGTTGGAGAAACCACTGATAATTACAGCACTGACCTTATATACATGGTTTTATCTAAAGGAGTCATAGTCCATCATGGCTATGAGAAAGTGGAAGTAAAAGACTCCAGGAAGGTGAAAGAGGGAAGTGTCTCCTTCAAACTGTCTGTGATTCCTGAGATGGCTCCTGTAGTGCAGGTTCTGGTGTATGGAGTACTGCCCAGTGAGAACGTCATTGCTGCTAGCAAGAATTTGAACGTGGAAAAATGTTTCACAAACAAAGTATCGCTGCAGTTCTCTCCTAGTGAAGCAGTTCCTGGTGAGGAAAACTCTCTCCAGCTCTCAGCTCTGCCTGGTTCACTGTGTGCTCTCAGTGCTGTGGATCAGAGTGTGTTCATCTTGGAGCCAGGAAAACGTCTGGATCCTGATACGGTCTTCAATTTGTTGCCAGTGAAATTAGTATCAGATTATGCTCGTGATGCTGAAGATGCTCAAGAGTGTTGGAATGTGTGGGCAAGACGTCAACGGCAGACACGGCAAGACCATGTTTACAATACTATAAAGAGCGTTGGGCTAAAGATGGCAACTAATCTGGTTATTAAAGCTCCTCACTGTTTGGTCTACAAGGGTGAAAGGTTTCACCGCCGCTATGGGGAACGTTTTGACCGTCTTTATAAAACGGCCCGTGTATCATCTTCAAGACACTCCCCCCACGGTGCAAATGTAATAAtggaaagaagagaagaatttGTTGAGACTGTTAGAAATGTCTTTCCTGAAACCTGGATATGGCAACTTGCTGAAGTGGGTGATTCTGGATCAGCTCAGGTTCCTGTCACTGTTCCTGACACCATCACCACTTGGGAGATGGACACTTTCTGTCTGTCCTCTAGAGGTGTGGGAGTGGCTCCTGCTGCTCAGCTTCGTGTCTTCCAGCCCTTCTTCCTGGAGCTCTCTCTGCCCTACTCCATCATCCGGGGAGAAGAGTTTGAGCTGAAGGCCACTGTCTTCAACTATCTCTCCAAGTGCATTATGGTTAAAGTGACTCCAGCTCCTTCCTCAGACTACACTCTAAAAGCCTCCTCCTCTGATGAGCAGTATTCATCCTGTCTGTGTGCAAATGGTAGAAAGACCTTCAGATGGACTCTCGTTCCCTCTGTGCTCGGGGTCTTGAACGTGACGGTCAGTGCTGCAGCAGAAGCGTCACAGACTGTGTGTGACAATGAGATcgtgagtgttcctgaaagagGACGCATTGACACAGTCACACGAAGCCTGCTGGTACAGGCTGAAGGAACTGAGAAAAGCAAGAGCCAGAGTTGGTTGCTGTGTCCACAAGGAAACAGTGTTTCAGAGGAGCTGGAGCTGACTCTTCCTGGAGATGTGATAGAAGGTTCAGCACGAGCTTCTGTTTCAGTGCTTGGTGATATTCTGGGCCGTGCCCTTCAAAATATTGATGGGTTGTTGAAGATGCCGTATGGCTGTGGAGAACAAAACATTGCTCTCCTCTCTCCCAATATCTACATTCTTCAGTACCTAGAGAGCACTGAACAGCTCACCCCAGCCATCCGAGAGAAAGCTACTGGCTTCCTTAAGAGCGGATACCAGAGGCAACTGAACTACAAGCATTACAATGGAGCATACAGTACATTTGGCACAGGACAGGGAAATACATGGTTAACCGCTTTTGTGATGAGAACTTTTGGAAAAGCACAGCGCTACATCTTTATTGATCCAGAGAACATTAACAGTGCAAAGAAATGGCTGTTAGAAAATCAGACACCAGATGGCTGTTATATTAGACAAGGAAGACTATTCAACAACAGAATGAAGGGTGGTGTAAATGATAATGTGACCATGACTGCTTACATCACTGCTTCACTGCTTGAACTGGGACATACAGCTGAGgatccTGTTGTAAGTAAAGGGTTATCGTGTATAAAATCCTCTATTGGTGACCtgaaacacctgaaacacactTATGCATCAGCTCTGCTGGCCTACACTTTCAGTCTGGCTGGAGAGAATGAAATTCGAGGGCAGCTGCTAAAGAAACTGGATACTGTTGCAATTGTAGGAGATGGTCGTCTTCACTGGTCTCGGTCAGCAACTGAAGACTCTGACTCCTTGTCAGTGGAGATCAGCTCCTACGTGTTGTTAGCTGTTCTCTCTACAGATAAACTCTCTAATGCTGATTTGGGCTATGCTAACAGGATTGTCAGCTGGCTGGTGAGGCAGCAGAATCCCTATGGAGGCTTCTCCTCCACACAGGACACAGTGGTGGCCCTCCAGGCTCTGGCTCTGTACTCCACCAAAGTGTACAGCTCAAACGGCTCCAGCACAGTAACTGTGCAGTCAGCAGATAAAGAGACTCACAGCTTTGAAGTGAATCAGAATAACAAGTTACTGTACCAGGAGAAATCCCTACAAAATGTTCCTGGAAAATACAGTGTTTCAGTGAAGGGCTCTACTTGTGCTTCAGTGCAGATGTCACTGTTCTATAATATCCCCACACCTAATGAAGTCCGTACACTAGGCATCGAGGCTAAAGCTGATGGAAATTGCACAAAGTCATTTGGACATGTTCTGTCTGTCAACTTCACAGTCAAatataaTGGGAAGTTAAACAGCACTAATATGGTCATTGTGGATATTAAAATTCTATCAGGATTCACAGGAGATCCCAATGAGCTAAGACACAGCTCACTTGTGGAGCGGGTTGAATCCAACAATGACCATGTGCTCATGTACTTAAAAAAGGTTCCAACAAATAGTCCTGTACATTATCAGCTACATATTAAACAGGTTCTTCCAGTGAAGAACCTCAAACCAGCTGTGATCAAAGTATATGATTACTACCAACCAAGTGACCAGTCTGAAACCGAGTACTCCTCCCCCTGTGTGTAAACCTTCACACCTGCATCTTCAGAATATGAGACAGAAAGATTATCTTCCATGTGCCAGTCATTTTTACTTATTAAgtatttttggtaaaataaatgtaaactttAACTCA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K03910 A2M; alpha-2-macroglobulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650144.1 lncRNA upstream 45132 15660210 ~ 15664348 (+) True LOC111192856
XR_002649787.1 lncRNA upstream 54159 15639346 ~ 15655321 (+) True LOC111192011
TU5122 lncRNA upstream 90309 15617118 ~ 15619171 (+) True G3808
TU5181 lncRNA upstream 172237 15536490 ~ 15537243 (+) True G3855
TU5164 lncRNA upstream 333837 15374631 ~ 15375643 (+) True G3840
TU5273 lncRNA downstream 33933 15763244 ~ 15772504 (+) True G3894
TU5242 lncRNA downstream 65472 15794783 ~ 15797303 (+) False LOC103040601
TU5246 lncRNA downstream 65472 15794783 ~ 15826103 (+) False LOC103040601
TU5297 lncRNA downstream 156803 15886114 ~ 15888367 (+) True G3917
TU5583 lncRNA downstream 427201 16156512 ~ 16157533 (+) True G4120
XM_022667703.1 mRNA upstream 91693 15211657 ~ 15617787 (+) True LOC103023867
XM_022667753.1 mRNA upstream 91693 15211657 ~ 15617787 (+) False LOC103023867
XM_022667792.1 mRNA upstream 91693 15211657 ~ 15617787 (+) False LOC103023867
XM_022667660.1 mRNA upstream 91693 15211657 ~ 15617787 (+) False LOC103023867
XM_022667826.1 mRNA upstream 91693 15211657 ~ 15617787 (+) False LOC103023867
XM_022668895.1 mRNA downstream 2168 15731479 ~ 15774952 (+) False LOC111192347
XM_022671384.1 mRNA downstream 3976 15733287 ~ 15762061 (+) True LOC103028185
XM_022668890.1 mRNA downstream 40966 15770277 ~ 15774952 (+) True LOC111192347
XM_022668835.1 mRNA downstream 52327 15781638 ~ 15797309 (+) True LOC103040601
XM_007245999.2 mRNA downstream 160894 15890205 ~ 15892830 (+) True LOC103027482
XR_002649582.1 other upstream 547206 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 663096 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 670566 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 745897 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2725211 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 813631 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 889735 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 889735 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2342653 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2671743 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile