RNA id: XM_007237920.3


Basic Information

Item Value
RNA id XM_007237920.3
length 2263
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC103045605
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24347555 ~ 24359302 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACTGCAAACATCCTCTTCCCTTTCTGCACTGAATCAAAGCTCACTATTGCCTGCTTCTAATTTAATCAGTCAACTTTTAAGGGTTGCGAAACGTTCTCCTAGAGGCCAGAGGAACACACAGCTGCAGCGGCGCTGCCGTCTCCTGCAGTGACCGAAGCTTCAGTGAGACGGAGCACAGAGGAGATGATGGACGGTTCCAGGGCCCGGGCTGAAGCTCCTTCTGAGGAGCCCAGCGCCAAGCTGTTCTGCTGCGGCTGTGTGAGACGCTACATTCCTCTGGTTTACAGAGAGGAGATCTACCACATACTGCGCATGGCTGGACCCCTGCTTGTGTGCCGGTTCCTGAACTTCCTCCTTTTCTTCGTGGTCACAATGTTCTGTGGGCGTCTGGGGAACACTGAGCTGGCAGGCTATGGCATGGCTTCAGCAACAATACATGTAACTGCCACAGCAACAGGATATGGACTAACTTTAGCGTGTGATACGCTGGTCTCTCAGACGTTTGGGAGTAAGAATCTTCTTCATGTGGGGGTGATCCTGCAGAGGGGAGTCCTGATCCTGCTGCTTTTCTGTCTGCCATGCTGGGCTCTGCTCATCAACACTCAGCCCCTTCTCCTCTTGGTGGGGCAAGACCCTGAGGTGGCCAGgataGCACAGATTTATGTTGTTGCTTACATTCCTGCTGTTCCAGCCATGTTTCTGTACCAGCTGCAGCGGTCTTACCTGCAAAACCAGGGTGTGATCATGCCTCAAATGTACGCATCTGTGGTGGTCAATATCGTGAACGTTCTAGCTAACTATGTTTTGCTCTTTTGGTTGGACCTCGGAGTACATGGTTCTGCAGCAGCCAACAGCTTTGCTCCGATCTTCAGCTGCATTGCGTTGTTTACATACATTCGGATAAAGAAACTCCATGTAAAGACATGGGGAGGAATGCTGGGAGAGGTTGACCTGGCAGCTCAGCACGTGGTCATAATGCTGGCTTACATAGTCTACATGATTCCATTAGGTTTGCAAGGTGCAGCATGTGTGCGTGTGGGTAACGCACTAGGAGCTGGGAACACTGCCGGAGCCATTCACACTAGCAAGGTTTCTCTCATCTTAGCAGCTATACTGGCAATCCTTCTGGGTGTTGTGATCGCCTCTACAAAAACAGTCATTGCCTTCATTTTTACCTCAGATGAGAGCATAGCAGAGTTGGTCTCTGAACTTATGGGTATCTGCTGCCCTCTTCAGTTCTTTAATGGAATATTGTGTGTTGGAATGGGAATTCTTTTGGGCACTGGGCAGCAGAAGATAGCAGCTATTGCCAACCTTCTTGGTTACTACCTAATTGGACTTCCTCTCAGCATCATTCTGACCTATCCAGCTAAGCTGCAAATTGctgGCTTCTGGTTGGGCCTCCTTGTTGCTGTCTTTTTGCTAGCAATCTATTTTGTAGTCATTATCTTCAGACTAAACTGGAAGAAAATGACAGAGGAGGCTATTGAGCGTGCTGGAATGGGGAAGACTGTAATCCATTCCGACCGTAGATCCAGCCATCGCCTCTCCGATAGCTTTTTCCTTGCAGTCACAAATGGAGAGAATGGGAATAGCTATCAGATTGTGAGCTCTCGAGACCAGACCGAGGAAAGAAGTCCTCCAGTAGCTCAAGAAAGACAGGAAGTgggacaagaagaagaaaagagttCTGCAGCATCAATGCTGTCCACCTCTCAGCTTATGGTCAGGAGAGGCCTGACCACTCTGGCTGCTGTTCTGATCCTGGCTGTTGGGACAGTCGTACATCTTACTGTTCCTCTGCCTGAGGTGGCTTTCATTACCAACAACACTATGGACTGGGAGAACTTCACTTCACCTGCTCCACTCACCACACAAACATTGTCCTTTTGAGCCTGATGGACCAAGGACTGGATGCATATTGGTACACCGATTAACAGCTCTGACTGACAAAGACAAACACATTGATTATCTTCACCTATAGTGGCACCTGTCAAGGGCAGCAAGTAAAAAGTTGGGCAGGCTTAGGGATCTGAGCCAGGGCTAGGCAATTGAGTCAGAGAATGTCAAAAATGGTCTAAAATAATCAGGTGGATCTTGTGAGATGTTACTACTATGCAGTGGTGAATGCATACCAAATGGGGTCCAAGAAAAGGACAGTTGATGAACTGGCTACTTCTAAACTTACAGGACTTAAAGGTATCTTCTAATAATGTCTTCAGTGGTTATGTGGGTTCAAGGTCTTGATTAGTCACGTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650065.1 lncRNA upstream 68087 24274492 ~ 24279468 (+) False LOC111192656
TU8259 lncRNA upstream 68088 24276567 ~ 24279467 (+) False LOC111192656
TU8265 lncRNA upstream 71096 24271550 ~ 24276459 (+) True LOC111192656
XR_002650063.1 lncRNA upstream 93643 24253155 ~ 24253912 (+) True LOC111192653
TU8218 lncRNA upstream 222193 24114947 ~ 24125362 (+) True G6051
TU8404 lncRNA downstream 25133 24384435 ~ 24384926 (+) True G6167
TU8405 lncRNA downstream 25801 24385103 ~ 24394430 (+) True G6168
TU8432 lncRNA downstream 65560 24424862 ~ 24429277 (+) True G6189
TU8433 lncRNA downstream 76294 24435596 ~ 24436712 (+) False G6190
TU8435 lncRNA downstream 76294 24435596 ~ 24456708 (+) True G6190
XM_007237922.3 mRNA upstream 6594 24329020 ~ 24340961 (+) True LOC103046413
XM_007237923.3 mRNA upstream 6594 24329665 ~ 24340961 (+) False LOC103046413
XM_022670469.1 mRNA upstream 21017 24311042 ~ 24326538 (+) True LOC103022207
XM_022670464.1 mRNA upstream 51205 24291928 ~ 24296350 (+) True LOC111192659
XM_007237925.3 mRNA upstream 60429 24283322 ~ 24287126 (+) True LOC103047234
XM_007245889.3 mRNA downstream 72020 24431322 ~ 24452907 (+) True wdr81
XM_022670522.1 mRNA downstream 75656 24434958 ~ 24452907 (+) False wdr81
XM_007245891.3 mRNA downstream 96384 24455686 ~ 24464470 (+) True serpinf2
XM_007245893.3 mRNA downstream 96385 24455687 ~ 24464243 (+) False serpinf2
XM_015604939.2 mRNA downstream 96386 24455688 ~ 24464243 (+) False serpinf2
TU7890 other upstream 440081 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 513725 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 996249 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 996509 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1382631 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1052892 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1680854 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1680854 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1683757 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2559989 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile