RNA id: XM_007237925.3


Basic Information

Item Value
RNA id XM_007237925.3
length 1847
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC103047234
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24283322 ~ 24287126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagaacagaaaGTGGCCTGTGTGTGCTACAGTGGTTGCGTAATCATGTTTATGAACAGACTGCAGTCTGTTCTAACTCACCATTTTCATAATCTTCTGAGAGACCTGGAGCAAATCAGCAGTCGGACGACATGGTGTCCTCTGGAACTCTGATGGGACTCTTCCTGATCACCCTGATCTACCCTGATGTCGAAGCTCGCATCAGGAACCTCCCGAAAATCATCAGTTTTCTCCAGAGCAACTATTCGGATGGTGATGAGCTGGTTGTGGTCATCAACGTTCCAGCAGCAAAGTGTAAAACACGAATGAAACCCGATCAGGACTTCCTCCAGGATGATCCTGCCTGGAGAGTGAAGCATGCCGTGAACAGCACTTCCAGAGTCTACAGAGGACAGCGGCTGATCGCTGCCAGACCAAAACCAATCAACAAAGCAAGTAGCTATCACCCCGAGTACCTCCTGCTCATCCAGTCCACCCCCTCAAACAAGACCTCCTTCAATACACCACTGAAGAAGCTCCTGAATAAAGACAAGCATGGCTGTGTTGTCTTCTACACCTTCAACTCCCCCTGTGTGAACACCTGCTCAACCCCCAGAGGTCCTTACAACCTTCTCCCTGCCCTGGACCTGCTCAAGGAGCACAAGGGTCCCAAAGCCTTTGTGTTTAGCAGGGTTAAAAAACGTGAGGTCGGTTCAACTTCAAAGAAAAATAAGCCACTCTGGCACTGCTACAGAATCGGTAAACATATGTACGCCACCATGACGGTCTGGGACAATTACGAGAGTCAGGTTCGCTGGGAAGAAAACGTGAGGGAGATAAATGCTCGAGTGCCGCTCCACCGATGTGAGGACGGCAAGTGTGTCCACTGTGTTCAAGACCACGAGGCTGATGGCAGGTGCATTCACAATACTGGCATATAATACCATGTAATACTATAtaacactatttattatacaaaagCTTTAGGCACATTATTCAAAACCCTTGATTTTAGCAATAAGAGAGTTTTAGTGCCCACTTTTTGGTTTATCTGtaggcttgatttagggcatgtcagtgtgcctttgctatcgtaatgacgggaaaagtacaccttgtgccaCTCAAAATGCACAGAAGGCACGCACTAatgctcttaattaatcattggtgtgttttgggcacaaTGGCATCAGCATGTcccttgccattccctttaagtgtcaggtgcgctctgactttggcgtaatgctattttaatggcgtaGCTACCTGAATGTGTCCAGCACTTCTGTTTATGCTGTAAAggtgctccagcagctcatttacgggaacagcaatgctatttcatttaattttctgtttttttgttgatgtaaaagttgggtttgtgctgctgtgtgtaaatggttgtgtaataataataagtgggGTCATCTGTGTTTTCCTCAATCAAAATAGCAATACGGAACAAATTTACCCACACACGccttatttccagaccaccacacccatctgtgtagatatattcagaagcactgttgctatttaaatgatgcaggctaaagatgtgaaaatagaatgttggcagggtgtaagatagcaatgagcatcacaacacgcCTGGgaaagggtgtaagatagggcacttagtcagaaaaaaaatcaagattaaaataaacaaaaattgtgtaaaaattaaGAATGTATTTCTGAAGAAATTAGTTAAAGTTTACTGTATAACACACTGTAAATACACCACAATGCCAAAAGACTGTAATCAGTCCATCTTAGTGTCAGGGGCTTTTTTGACAGTTATACAATGAATTTAGCATGATTGCTTGCAATTCCAGGTCCACAAATatcta

Function

GO:

id name namespace
GO:0002573 myeloid leukocyte differentiation biological_process

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650065.1 lncRNA upstream 3854 24274492 ~ 24279468 (+) False LOC111192656
TU8259 lncRNA upstream 3855 24276567 ~ 24279467 (+) False LOC111192656
TU8265 lncRNA upstream 6863 24271550 ~ 24276459 (+) True LOC111192656
XR_002650063.1 lncRNA upstream 29410 24253155 ~ 24253912 (+) True LOC111192653
TU8218 lncRNA upstream 157960 24114947 ~ 24125362 (+) True G6051
TU8404 lncRNA downstream 97309 24384435 ~ 24384926 (+) True G6167
TU8405 lncRNA downstream 97977 24385103 ~ 24394430 (+) True G6168
TU8432 lncRNA downstream 137736 24424862 ~ 24429277 (+) True G6189
TU8433 lncRNA downstream 148470 24435596 ~ 24436712 (+) False G6190
TU8435 lncRNA downstream 148470 24435596 ~ 24456708 (+) True G6190
XM_022671472.1 mRNA upstream 21655 24253928 ~ 24261667 (+) True farsb
XM_022670424.1 mRNA upstream 34827 24235851 ~ 24248495 (+) True usp16
XM_022670412.1 mRNA upstream 66470 24181559 ~ 24216852 (+) True LOC103021580
XM_022670416.1 mRNA upstream 66470 24181559 ~ 24216852 (+) False LOC103021580
XM_022670407.1 mRNA upstream 103678 24177344 ~ 24179644 (+) True LOC103042333
XM_022670464.1 mRNA downstream 4802 24291928 ~ 24296350 (+) True LOC111192659
XM_022670469.1 mRNA downstream 23916 24311042 ~ 24326538 (+) True LOC103022207
XM_007237922.3 mRNA downstream 41894 24329020 ~ 24340961 (+) True LOC103046413
XM_007237923.3 mRNA downstream 42539 24329665 ~ 24340961 (+) False LOC103046413
XM_007237919.3 mRNA downstream 60429 24347555 ~ 24359302 (+) True LOC103045605
TU7890 other upstream 375848 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 449492 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 932016 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 932276 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1318398 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1125068 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1753030 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1753030 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1755933 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2632165 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile