RNA id: XM_007243028.3


Basic Information

Item Value
RNA id XM_007243028.3
length 1746
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC103031483
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22587190 ~ 22594557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCTCCTTGGTAACCAGCTGTTTGGTAATGTGATTGGTCTTTACAAAGCTAAAAAagtagctaggttagctatctATTGTAAAATGTTGTAAATTCAGTTTTTGTGATTATTTGATTACTTAGGAGTGAACATTTTGTGAGCATCATATTTTATAATCCAGTACAGTCCAGCTGAGGTGAAATACACCCTGTTggcctgtttattttttttatttcggtTTGGTTATGAGTTGTACAAGTTTTACTTTAGGTTAGCATGTTAGCCTGTTGTTAGTCAGCAGAGATAACGTTACCGTTTAAATACcggtttagtttgtttgttagctAACATTGTTTGGATGTTCAAAATGAACGGAGCTCCACTGGACTTCTCTTTTAAACAACTCAGCTCGCTAGCAGATGTGGCGTTGGAGGAGCCGAACACATCTGTACGTCCACTCAGGAGGAATCCGGATGGGAAGTTCAGCAGCAGTTCACTCAGACTCAACAATAACATGATTGTCAACCTGCAGGGCCTGACCGACACCCTGTCCACTCTCCTCTCCAAACCCCAGCGCCTCGCCTGGCTGGACCTGTCCTTCAACTTCATCACACACATTCACCCGgtcctTACAGAGCTCTCAGAGCTACGGGTGTTGTATCTTCATGGTAACAGTATACGTAAGCTGTCAGAAGTGGACAAGTTGGGGTCGCTGCCATACCTGCACACCATCACTCTGCATGGAAACACTTTGGAAAGCGAGCAGGGCTACAGGGGATATGTGATCTCTGTTCTTCCTCACCTGAAGATGATGGACTTCAGCGCTATTACTAAAGAGGAGAAAATTCTGGCCTCCATTTGGCAACGAAGCAGGAGGAGCCGTGGAATCACTGATCACAGAACAGAAGGTTAAGGCGTCTCAATGGAAACTAGTCTGAGCATGAAATAAGTCTATTGTATATTAAAGTTTTCAGGACATTCTTCTGCTTACTAGAACAACATTGTGTGCCACTTTTTCCAgctgtaataatgcatatttgtGTAGCagaacaacaacacacactgaAAGCTAGCCAACATAGTGGAGGTAGCTTCACACACTGTTACTGTAGCTAAGatcccaaaataaaaaatacactctcTCCATATACACTAACATGCCAGATGACATGACATGCCAGATGTCATGTCATTTCTGGCAGAATATCTGTCTAGTGTGGGTGGTGATATCACCTTGCTGTTTTGGACACAGGTGGATTAGAAACACACTGTAGATGTGATGTTAATACAGTCTAGTTAAATTTTATGTTGGCTGATATTTGGTATTTTCTACATGTTATAGTGTTATATAGTGTACAACTTTAAAGAGTATTATAGTACGTGTTAGtgcttaatataatattatacagaatagtagaacattatataacattataaataataaaagagtcttaaagctGTATAAAGCTTTATGAAACCTTACAGGGCTATATAGAACATTATACAACTAATGTTGAATAATATTTGCTTTAAAGAGAGCAATATGTTTTTTAGAACATTACAGAGCTTGGAGGAAAACAACAGCGATAACTTTTTAGATCATTATAGCGCTTTAGAGAACATTTTAAGGCTTTATAGCACGTTTAATGTCCTTATAAACGTTTTAAGACCTTTATAGAACATTGTAGATCATACAATGTAAAATTAGTTGTTAAATTAGTgtctaaacaaataaataaacaaacaaatgtccCTGATAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7339 lncRNA upstream 62444 22521606 ~ 22524746 (+) False LOC103043812
TU7342 lncRNA upstream 90288 22481707 ~ 22496902 (+) True LOC103043812
TU7351 lncRNA upstream 90288 22481707 ~ 22496902 (+) False LOC103043812
TU7346 lncRNA upstream 149172 22434783 ~ 22438018 (+) False LOC103043812
TU7321 lncRNA upstream 241408 22344076 ~ 22345782 (+) True G5455
TU7548 lncRNA downstream 112556 22707113 ~ 22707769 (+) True G5595
TU7581 lncRNA downstream 228314 22822871 ~ 22824066 (+) True G5619
TU7587 lncRNA downstream 308209 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA downstream 308209 22902766 ~ 22917835 (+) False G5620
TU7604 lncRNA downstream 310581 22905138 ~ 22905655 (+) True G5628
XM_007248585.3 mRNA upstream 71733 22506867 ~ 22515457 (+) False aasdhppt
XM_007248587.3 mRNA upstream 71733 22506886 ~ 22515457 (+) False aasdhppt
XM_007248586.3 mRNA upstream 71733 22506911 ~ 22515457 (+) True aasdhppt
XM_007248590.3 mRNA upstream 90310 22407558 ~ 22496880 (+) False LOC103043812
XM_007248591.3 mRNA upstream 90310 22407558 ~ 22496880 (+) False LOC103043812
XM_007248584.3 mRNA downstream 444 22595001 ~ 22604561 (+) True lamtor1
XM_022669802.1 mRNA downstream 13266 22607823 ~ 22628028 (+) True numa1
XM_022669805.1 mRNA downstream 13266 22607823 ~ 22626804 (+) False numa1
XM_007248583.3 mRNA downstream 34504 22629061 ~ 22641854 (+) True LOC103041960
XM_007248582.3 mRNA downstream 48053 22642610 ~ 22649464 (+) True LOC103041654
TU6745 other upstream 1587990 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 2035581 20549217 ~ 20551609 (+) False LOC107197594
TU6404 other upstream 3421559 19160731 ~ 19165631 (+) True G4775
TU6210 other upstream 3827332 18759375 ~ 18759858 (+) False G4612
XR_002649972.1 other downstream 48053 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other downstream 48053 22642610 ~ 22664836 (+) False LOC103041654
XR_002649977.1 other downstream 114355 22708912 ~ 22758213 (+) False LOC103045948
TU7588 other downstream 316466 22911023 ~ 22923081 (+) False G5620
TU7589 other downstream 316466 22911023 ~ 22923081 (+) False G5620

Expression Profile