RNA id: XM_007245916.3


Basic Information

Item Value
RNA id XM_007245916.3
length 5147
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC103030333
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25586779 ~ 25624804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTGGAGCGCGTGCGCTGTGCTCTGCTGCGTTCAGCCTCTGGGGCGGCTCAGCCAGGCAGCTCGTGCGCATGCGCGGTTCATGCTGGCGAAGCCTGTGGAGGAgctaaagcagcagcagaagagccGAGCGGAGCGGAGCCGAGCGGGACAGACCGACTGACCTCACCAACTCCTCCACCGCGGTTTACctgctctcctctctctctgccgcGCCCTGTGGATATTTACTCAGCGGCGGCGCAGTGTAGGATGCAGTGACAGTCTGGCCAGTGAATGTCTTCAGACTGTCTGTTTGTGGTGTTCCTGCAGCGAGTCTATCAAGGGAAGGGTACGTTTTGAGTGGTAGACCTCCCTGTGAGCCGGAGCCGGTGTCCTATTGGTCATCTCCTGCCAGGGAGACAGCAGCTGCTGCACGCCCTTCACCTgacccccctccctccccaccGCCACCATGGTGCTGTCACAGAGGCAACGAGATGAACTAAATCGAGCGATAGCTGATTACCTTCGTTCCAATGGATATGAAGAGGCATATTCAGTTTTCAAGAAGGAAGCAGAATTAGAcatgAATGAGGAGTTGGACAAGAAATATGCTGGCCTTTTGGAAAAGAAATGGACTTCAGTCATCAGATTGCAGAAGAAGGTGATGGAGTTGGAATCAAAGCTGAATGAAGCACAAGAGGAGATCACTTTAGGGGGGCCTATAGCACAGAAACGAGACCCCAAAGAATGGATCCCCCGTCCTCCAGAGAGATATTCTCTGAGTGGCCACAGAAGTCCTGTCACCAAGGTCATTTTCCACCCCGTATTTAGTGTAATGGTGTCCGCGTCGGAGGATGCCACAATTAAGGTATGGGATTATGAGACGGGAGACTTTGAGCGGACCCTCAAGGGTCACACAGACTCTGTGCAGGACATCTCCTTTGATCAGACTGGAAAGCTGCTGGCCTCCTGCTCTGCAGACATGACCATTAAACTCTGGGACTTCCAGGGCTTTGAGTGCATCAGGACCATGCATGgACATGACCATAACGTTTCGTCTGTAGCTATAATGCCCAATGGAGATCATATAATATCTGCCTCTCGAGATAAAACCATGAAAATGTGGGAAGTTGCTACAGGATATTGTACCAAGACATTCACTGGCCACAGAGAGTGGGTACGCATGGTACGACCCAACCAGGATGGCTCCCTGATTGCCAGTTGCTCTAATGACCAGACAGTGCGTGTGTGGGTGGTGGCCACGAAAGAGTGCAAGGCTGAGCTGAGGGAGCACGAACATGTAGTGGAGTGTATCTCCTGGGCCCCTGAGAGTGCCCATCAAACTATAATGGATGCCACTGGCTCTGAGACTAAGAAGAGTGGGAAACCTGGACCGTTCCTGCTGTCTGGCTCCAGAGACAAGACTATCAAGATGTGGGACGTCAGCATTGGCATGTGCCTTATGACGCTGGTTGGCCATGATAACTGGGTGCGCGGTATGATGTTTCACCCTGGTGGAAAGTTTATCATAAGCTGTGCTGATGACAAGACTTTGAGGATCTGGGACTACAAAAACAAGCGCTGCAAGAAGACCTTGAGTGCCCACGAACACTTTGTTACCTCTCTGGATTTTCACAAGGCTGCTCCCTACGTGGTCACCGGAAGTGTAGATCAGACAGTAAAAGTGTGGGAGTGTCGCTGACCTTGCCTGCAGGAATCCACAACCACCACAGCCCTTCACCCCAACCCCTTTTTTCCGTCTGCTCTGGATGCACTTGACCACCATGGTTATGACCCACCCAGCTCTGGTTCAATAACTattgtccttttatgtaaattaTTCTGGATGTAGGTCGAGCTATTAAATGTTACACActcaaaaaaaagtattcttgCATGGTGAATCCAAAATTGTATACTGTAAATTTACATAACGTTGTCTAGAATTACCATAGGTTTAACACAGGCTGACCTTTCACTCAGCCTTACCTACCGAAGGCGTAAACTGACTGGGTTAATGTAGGGCACTATACTGATAATTTAATGACAGTGTCGTCCTTGTTTGtactttaatttcttttctttttttttcttttataaatgtaaactttttttccctcttttgtcatttttttctatCACTGTCGTAGTCTGTTGGTGCCTAGCTTGGTGACCTTTTGGGGAGGGAGGGAAGACAACAAGGTAATACCAGAATACCATTAATCcctaaaaaaaagaggaaaaattgATCGTCTGTGGGGCTTGTTATCAGAATAATCTGTAGCTTTGTAACATCATTTCTGAAGTGTGCTTACTATTCATTCTCTTATTGTGGAACTAGATGATATTTTAATGACTTCATCTAAGAACGATTGAGAGAGTTCTTCTCTTCTTGAAACTTTAGGGGATCAGTCTTTGTACACTTGTCATGAAACGTCCTACTGAGATGAGTATCTGAGTTCAGAAGCTAATTTTGCTTTGCTGGGGAGATTTCCACCTGTTTCTGAATAGACCAGGCTGAAAAGTGGGCAGcaagattttaattttatttttttcttccctaaaTTAAAGTATAGGCCATGTGTGTGTTGGACTATTTTGACCCCATATTAGTGCACTTCAAACATTTTTAGCACCAAAAAAGGGTTGCCTCAATGGAATATTGGTGCTCTGACAGTGTAGTATTAGTTTAAAgagatttatttctatattgcaaaaatatttttttgttttgtttctactCTTAAAAAATCATGTACACCTTGTCTTGTTGCCCCTTTTAGCAGACGATGAAgttgaagtttgcaaaaatgCAAAGCAGTGCAAAAGAAACCCTCCGTTTGGACTTGTGGAGATATAAATGAAGCATGACAAGGGTTCAAAGGGTTTCCTAGTGGTGGGTAAGGGATGTGCAAAGTTCAAACCTGCCTTGATAAAACAGCGGGTTTGTATTGTCGaatttacaaaaatgggtgGGTGGTGTAATCCTTGTGATAAATTGAGAGCTGGGATAGCTACTGTACGCTCAATTCTGTACTGACTGACTGGCTTGTGGGTTATTTAAAGGATGATTCTAATGAAAAGCATATTGTCTGGCTGCCTGAGCTCTCTGTGGAAGTTATGCTTGATGGTGGTAGCTCGTATTTTCCTCCATTTCATTGTAGACAGGACAGTTTCACAGTGTAGACTACAGCAGCTCTATCTTGATCCAGTGAAACATAGACAGGAGTAGAGAGTGCTGGGAACACGTGGGATCAACCTGAAATGGGAGAGCACCTCAAGTTCAAGTTTGAGCAATGCCTGATATTACTAATGTCTTACGAGTAGCACATTCTCTGCTGTTCATCTTGCAATGTGTGTGGGTCAATGTggataaacaaacacactatTGTCCCAGTTAATGAATAGAGTTAATGGATCCCAAAAGTGGAGGTAAACCATTCCATATTTTGAGAATTAAagtaaggaaaaaagaaagaaaaagtaagtaACCTGCCTTTTGTTTTTTGGCAGCAGACTGAAAATGTtggggaaaagaaaaaaaattgaaaattacggtaatgaggaaaaaaaaaaaaactaacttgcACATCCCTCATGTTAGATCTTCTGTCCTTTCTGACTGAAGGTTTAAGCAATTTAAGACTtattaataaatgcataaagAGATCATTTTAATTAGCCTTTTCATTACaatgcaattattattatataataaagaatTCCACTGCTTAACCAGTCTATTATCTAGCGATTTTCCTGTTCCTGTGTGTGTACTGGATgtacctgctgctgctgaaaacCTGATAGTGGCTAGTCTGAGATCTGTACCTGTCGACATAGCACTGCTGCATGTAACAGTACTGAGTACTGGTTGAGCTGTCTGGTGGGGGTCTGTGGTGGTCCAGGTAGTACCGTTGGAATGCGGTGACTAATCTCAGGCCGTCCTGCAGTGTCTTAACTAAGCGAAACAGTCGATTTTTCCTCCTGTaaagaaaaatggaagaaaatctTAGTTTCTTTGCTCGTGACTGGTTTAGGGGATAtctgtgtataatatatatgtactaGTGCTGTTAAACTACGTATTTAATGACTCCAAACACAGACGCCCTACCAGATAGGCCACCTGGCATGATAACTGTGATGAGCTCAGTATGTGGTTGTAGGCAGactggtcagtgtgtgtgtctgtgcgctCTGTGAAGGAGGTTGACTCCTCTGTCGTCTTTCTTTTTGTGATGGGATTGCGGCAGACTGAGGGAGAAGTGCCCACCCCAAACAAAACACCGTTGATGCCTCCTGTAAAGAATATGtaggaaagaaaaaacacagcttGCTATACATTACGATAGTCAAATCGTCCTGTTTAGTTTCTTGTACCTCTTGGACAGAAAGTGGCCCCTAGTACGGTGGGGCCTGTCTTTTACTCAAGGACACAAGCAGGTTAGACTATGCTCTTAAGGGTGTATTCCAGCACCTGGGcctataccaaaaaaaaaaaaaaaaaaaaacagcaggggGATTTTCCTATTGGACAGTTTTTATATATCcgtctatgataactccaaaaTCCTGCATTGTAAAATACTGTACCCAGACCCAGGTCTCACAGGAGATCATGACTTTTGCTCTTATTCACGGTGTGCACAGCTGATGCTCAAAGGAATACTTCCTTATAAAGCGCTACTCCCTCCTGATTGGCAGATTCAAGTCTAACCCAAATTCAGGACTACCTGAAAACATACCTTGCTCTAAAATATACCTTGCGTTTCTTGGTTCGCTAAGAAAAGGCAAAGAATATAAGTGACTCTTGGACACGGTTTTCGACACGTCACCGCGTGAACACTCGCTTTGTGGGTACCAAGGGGTTCCCAGCGTGCCCTGCAAGGAAATTGCGTTTGCCATTCACAGGTCCCAAGCAATCCCAACGCTGCACTCACTGGATGGACTAATGTACATAATATTATTTGTGGGTCCCTCCTCCAGCCACAAGTTCATCTTTCAGCTCTACTTGCTTTGTGAATAGATGGGAGGCTTCAGTCTTCACAGCTCTAATGGGACTTTTGCTTTCATGGTTATCACTGTTCACACAGCCAATTGTTAACAATATATCTGGATGTCATTATTGTTTGCAACataattaaagagaaaaaaatgtaa

Function

GO:

id name namespace
GO:0006928 movement of cell or subcellular component biological_process
GO:0030154 cell differentiation biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007399 nervous system development biological_process
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0005875 microtubule associated complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16794 PAFAH1B1, LIS1; platelet-activating factor acetylhydrolase IB subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8810 lncRNA upstream 37094 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 83194 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 85594 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA upstream 85594 25499127 ~ 25501185 (+) True G6445
TU8778 lncRNA upstream 112593 25470677 ~ 25474186 (+) True G6441
TU8873 lncRNA downstream 171818 25796622 ~ 25797186 (+) True G6514
TU8875 lncRNA downstream 174114 25798918 ~ 25799741 (+) True G6516
XR_002650097.1 lncRNA downstream 239582 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 239641 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 335677 25960481 ~ 25997692 (+) True G6567
XM_022670712.1 mRNA upstream 2798 25551222 ~ 25583981 (+) True cluh
XM_022670714.1 mRNA upstream 2798 25551222 ~ 25583981 (+) False cluh
XM_022670716.1 mRNA upstream 2798 25554352 ~ 25583981 (+) False cluh
XM_007245915.3 mRNA upstream 38384 25530149 ~ 25548395 (+) True ccdc92b
XM_007245910.3 mRNA upstream 62324 25482105 ~ 25524455 (+) True LOC103028751
XM_022670724.1 mRNA downstream 1531 25626335 ~ 25676963 (+) False mettl16
XM_022670722.1 mRNA downstream 1532 25626336 ~ 25676963 (+) True mettl16
XM_022670741.1 mRNA downstream 56272 25681076 ~ 25713432 (+) True mnt
XM_007245922.3 mRNA downstream 56301 25681105 ~ 25713432 (+) False mnt
XM_007245923.3 mRNA downstream 101365 25726169 ~ 25758766 (+) True vps53
XR_002650083.1 other upstream 158428 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1679305 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1752949 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2235473 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 415352 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 415352 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 418255 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1294487 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile