RNA id: XM_007245926.3


Basic Information

Item Value
RNA id XM_007245926.3
length 3229
RNA type mRNA
GC content 0.38
exon number 6
gene id exo5
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25764488 ~ 25774371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAAACTGGAGGCATGTCCAGgcataacacaaacacacaggaagTGAGTCAGAACATGAAGATCTATAGCTAGTAAATAGAGAGAggtgtgagtaagtgagtgatggGACCTGTGATACCTTTAATACGCGCGTGATTATCACAACATGTGAACACGTGATTACAGCAGCAGTATAATCACCAGTACTCTGTAATAGTGATGAGagtctgagctgctgctgctgctgttatcaTGGAGTCTCAGAGTGAAGAGTGGGACAACATCAGCGACTCTGAGCTCCTGGATATCGATCTAGATCACTACAGCTCAGATGAACAACCTAAGCCATCCTGTAGCAAACCTGACACCAGTAAAGACACTGTGAACGCCATAATTTCCTTACCATCAGATCACAGGAATGAACTGGGCCTGCAGCAGAGGAGTGTTAAAACAGATGAGGAGAGAGGtgagaagaggaagagaaacgCTGGGGTTGTCCAAAAGCCCTTACTGCGCTTCATGAAGCGTCACCTGAGTGTAACCCAGCTGTGTGAGCAGACCTGGTGTGAGCTAAAGCTCGAATACGGCATCCGAAATCCTCAAATCAGGAAAACAGACAAGCGGCGGACAGAGATCCAGACAGGCGCCAGTATTCACCTGGCAAGAGagctggaAGTTCATTCAGTGATTCCTATTGATACGAAGACCAGAGAGGATTCTTTTGGTATCAGGATCCTTAATGTGCTACATATGATTCCCATACTGGAAGCAGGCCAGTGTGTGCGTGAGTTTCCAGTGTTTGGAGTGTTGGAAGGTGTGAATATTATGGGAGTCATTGATGAGCTGAGTTATAACCAGAAGGGGGAGCTGGTGTTGAACGAGCTTAAGACCCGCAGGCACGACTCTCTCCCTGGAGATGCTCAGGCCCTCGGACACTCATTTCAGGTTGGCTTGTATAAGCTTCTGTTTGATGGACTGATCAGAGGAGAAGTGAGGAGAGAGCACATTGTGAACAATTTCACACTGCGACCCTCGCAGGTACTGGGATCTGAGGTTCAGGCACATGCTCTGAGGATCGGGATTAATGTGGTTACGTTCGGTGAGCTGGTGGACACTTTTCTCATGGTCCTGTCCTGTACTGAGGTGCCGTGCATCGACCTCCTCCAGATGGAGTACCGTCACCAGGACTCTAATAGCCTCATCGGCACCAGGGTGGTCCCCTTCGACGAGGCACAGCTACGGTCAGACCTGCGGGGCTACCTGGCCTACTGGACCGGCCAGAGGGAGCCCAGAGGAGTGGATATAGAGGATGCATGGAAGTGCACCATGTGTCCCTACAGCGAGATCTGTGACTGGAGGAAGAACAGCTCACAAGCCCCTGAGACTCTTCACACTAACAAGAGAATCAAATGAATtgacatacagaaaaaaacattatttgcaGCTGTGACTCTAATGCCCCTAATACCTCTAAGCGTATGCCTGTAATcagcattttagcatttttataacatttttttttactataatttttttatacctatgatttattttacatactttGAAGTAGCTTAAGCTAAGCATAAGCTGACTTTCCTGAATAATTAAGACTGTTTAAGACAGCGTAATCATGCACTGATTTTGTATGAAaggttttaaataatgtttaatatcctTTTTCAGATatgaatgtaaaattatttgatAGAAGGACTGTTTACGTAAGCGTTTCATGACAAAAAACTGCTGTGGTTAGTTTATAAAACTGacaaatgtactttttaatgaaattaacaTATGCAATTAAGTCAAAAACTTAAATGCTAAAGAAATTTGAGACAATTAAACCAAGCTAactcaaaactaaatatttaagaTATACACACAATTGATTTGTGtagaaactatttttttttaattaaggtgAGTTTAATTAGTTAAATTACACTAACTAGTTGAATCAAGACAGAGCAACCTTAAGTAAAACTTATACCTTGTCCAAATGGGGTTCTGATGCCATCCAAAAACAGTAACTTACAAATAATACTCAAATGCAGCAACAAAGTACAACATTCCACCCTTAATGAGGAATGGAAATGTGCAGCAAACACAAGAAATTGTTACATTGTTAATTGCATCCATTAGATATGGAAACGTAATGCTAAATTTCCCATTAATTAtgcacatgtaaaaaaaaaaaatccaaggtTTAAACCAGTTACTTAAATACATTATCaaaaagtatatatacagttgtgcaTATATTTGAtttctgtatttaagtactCCAAAATAATACTTTTTGGAGTATTTGGGAAGGTGTATTTGTAGAAAACACAGTGCTTTATTTGAATGTAATAGGGGGATTCTGTCCATAGGATGAggctaatatttaaaaagtaaagtgGAAAAATGTACATCAAAAGTTCAAAGTAACTACTATGAAAAACATTTAGTACCAGTCGAATGTTTGAACACACATTCTCTAATATTTCTCtcgtttttatcattttttacattttagataaaaattaaagacttaaaaaaacacctgatagataaaaccgagttgaagctcagagtaaaagaaaaacagttaaCAAGAGCTTAGCCCAGCTTCTCATGAAgcatctaaagtataaaatctaTTTGGgcctgtttaacacttttttgtttattcacaATTGCATGTGTTACTTCATATTTTTGATGTATTCAGtattaataatcataaaaaataataagaaagaaaaaaataattaaatgagaagaagtgtgtccaaacatttcaCAGGTACTGTATATTCAATTTAATTGTAAAGGAAGTAAATTATGATTTTCCATGAAAATGTGAGGTaagaaaataagtttaaagcAAACACAGTTTTTTGTCTAAAGTTCATCAAGTTgttaatataatgaaaaaaataggtATAATTTTCCACTCTTGATGTAGCATGAAAGTGTGTTTACTGCACAATACTTTATTTGAATGCAATACTGATTTTGCCCATTAGATGAGGCtgttgttacattttttttccatgttttctctgAATGAAAATCAGGAGACAAATACGCTAGAGCGGTAAGACACAACTCAGACCATTCCTGCCTTGTAAAATGACCAAATAAGGATGCATCATTCTGTCTGTACTTATGTCTGATTCCTGTGGAACTGCCCAGTCCTCAAGCATTATTCTGTGTGACATTTACTGCtgacattaaaataattttcagtaAAAAGTG

Function

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K17815 EXO5; exonuclease V

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8810 lncRNA upstream 214803 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 260903 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 263303 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA upstream 263303 25499127 ~ 25501185 (+) True G6445
TU8778 lncRNA upstream 290302 25470677 ~ 25474186 (+) True G6441
TU8873 lncRNA downstream 22251 25796622 ~ 25797186 (+) True G6514
TU8875 lncRNA downstream 24547 25798918 ~ 25799741 (+) True G6516
XR_002650097.1 lncRNA downstream 90015 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 90074 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 186110 25960481 ~ 25997692 (+) True G6567
XM_007245924.3 mRNA upstream 2005 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 5722 25726169 ~ 25758766 (+) True vps53
XM_022670741.1 mRNA upstream 51056 25681076 ~ 25713432 (+) True mnt
XM_007245922.3 mRNA upstream 51056 25681105 ~ 25713432 (+) False mnt
XM_022670724.1 mRNA upstream 87525 25626335 ~ 25676963 (+) False mettl16
XM_007245927.3 mRNA downstream 40907 25815278 ~ 25826749 (+) True LOC103033293
XM_007245928.3 mRNA downstream 141866 25916237 ~ 25929253 (+) True aipl1
XM_015604938.2 mRNA downstream 156092 25930463 ~ 25945662 (+) False tusc5
XM_007245929.3 mRNA downstream 156097 25930468 ~ 25949493 (+) True tusc5
XM_007245938.3 mRNA downstream 342735 26117106 ~ 26121289 (+) True tmem199
XR_002650083.1 other upstream 336137 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1857014 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1930658 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2413182 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 265785 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 265785 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 268688 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1144920 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile