RNA id: XM_007245927.3


Basic Information

Item Value
RNA id XM_007245927.3
length 3831
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC103033293
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25815278 ~ 25826749 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctacatgctgctgctgctgcagctgcggGCTGGAGGAACTGTCTGCACAGCGAGCGCCTGCTGACTGACTTTAAAGAGCTGAAGGAGAGGGAAGAGCTGTTGCATAACCCGCAGAGCAcagcgcgcgcacacacatacatgcacgcgcacacacacacacacatgcacacacatacacattacaGAGGCACGCGCACCGCACACTGGCAGCAGCGGTGGCGACAGCAGCAGCGCTTTATTTGAAAACCCAATGGCGCCAATACAGGAAAATACCTTGCGTTAGTCTAAAACTGAGTGGTTTGCGTGTTTTTGCGTGATTCTCACTCTGCTGGACTCAGCCGTGGATTATACATTACTTATCCAGAAATGACTCGTTATGCTGGACCTTTGGAGAGGAGCAGGACGCATCAGTGCGTAAAACTACAGTGAACTTTGGATGGTCTGTTTTTCCTCAGCTATGCTGCTGGGCGCTGTGCGCGTTCACGTtcttcaccatcatcatcagcaacagcagcagcagctgcattagcagcaggagcaggagcaacaatagtagcagtagtattagtagtagaagtagcagTACCAGTACTATGGACCTGGAGCCTTCCGAGCCTAAAGACTGTTAACTGCGTCTCCCAGACTTCAAACCTGCGTTTCTCCACTAGAAGCCGTTCAAATGCTGGAATGGATGAGCGCTGTGTGCATGCTCGTCCTGGTGGCCACATTCTGGCCGGTGTTGAAGCGCTTGTTGGAGGCATGCACTTCAGACACCGAGCAAACCAACAAGCCAGTGCAAGTGCAGCAGGAGGGTCCACCACCAgcaacaccagcagcagcagcaccaaaACCACCAGGACCACAAGGACCAGGTGCAGCCCAAGCTCAAGCTCCACAGCTTGCGTTCATCTGCAAGCCCTCCGCCCTGGCCAACTACCTGCTCCAGCACTGCAAGAGCTTCTGCAGAGCCGACTCAACCGCAGCCCCAGCCTGGAGCTGGAGGAGCTTCCCCGCTCTGCAGACCCTGTTCGGTGCTCTCTGGCCTCACGAGTCCACCGTACATTTCGTCCGAGACCATCTACAGCTGACCGACGACGGACTGGTGGCTCTGGACTGGgctgttggtggtggtggtgctagTGGTGGGGCACATCACATTAAGAGGAGAAGGACTTCCAGCAATTCCACCAGCCCCATTCTTCTCATCATCCCCAACTCGTTTGGGAAGATCACAAGGAATGTGCTGAAGCTCTGCGAGGCGGCTCTGAGTCACGGCTACCTACCCGTGGTGTTTAACCGCCGCAGTCAGAACAGCACACCCCTCAGCACCGTCAAGCTGCAGCAGTTCGGTGACCCGGCTGACCTGAGGGAGGCCGTGCGCTACATTCGCTATCGGCAGCCGGCCAGTCGTCTGTACGCTGTGAGTGAAAGCACGGGCTCCGGACTCCTCCTGTCTTATCTGGGGGAATGTGGTTCATCCAGCTATGTGACCGCCGCTGCCTGCCTGTCCCCTATTTTCCGCTGCCAGAGCTGGTTCGAGAGTGGTCCCTCCTGGCCCTTCAACTGGGCCCTAGTGCTCTACCAGAAGATCTGCCTTAGCAGgtACAGAACAGCGCTGAGCGAGGTGATCCACACTGACAGCCTGTTCTCCAGCAGCTCTCTGAGGTCCATGGAAGAGGTGCTCTTTTGCCAGGCTGGCCTGAAAGGGGTGCAGGTCGAGGGGGCCTGGGAGGCCTACTGGGAGCGGAACGACCCGCTAAGGGACGTGGACGAGGTGGCCATCCCTGTGCTGTGCGTGTGCAGCCGGGACGATCCCGTCCGTGGTGAGTCTCAGGCCACGCTGCCCCTGGAGCTCTTCGAGAGCAACCCGCACTTCTTCCTGCTGCTTTCTGCTCAGGGTGGACACTGTGGGTTCTCCATGTCTGAGGAGGACCCCATGCTCTGGAGCCACCAGGCTCTGCTGGAGTTCTTTAGAGCCACCACAGACTTCTTCGCCGCTGAGGAGAGGTCTAAGCTGGCGGCGAGACGAAGAGGGCTCAGTGGGGCTGGAAAGTCTTTCCGTCATCGCAGCGTGAGCACCTGCAAGAGGCAGCCTGTCTGCTCCCACAACATCCATGCGATCTACAACTGGCAAAGGTCCTATACCAGATGATGAGcactgatgagtttctttaactTGAAATAGGGGTTTGGGGGAGAGCTGTGTGTTGTGGACCAAGGATGCAGTGACAATCACAAAATCTTGGATATGCACGTATATTCAGTctacacaaatattttttatgtatctgATCTGgccaaaatttattttaaaatatatttcttaattttgggCAAGacaatataatttcgatattaATATGAACAATATAAATGCCACAGATGCAAAAACTGCCAAACATGcccacaacagaaaaaaaaaaacttctgaaaATTGAATTTTGCCCACTGTAATGTCTGTTAGGCCAGTCAATTTTGTTGGATAATATATTGTACTGAAATTATTGCAACTGCcgatatattttattgtaatttaaaggttaaaaagttaaaagtttcaTGCCACTGATTTAATGATAATACAGTACCATAATATTGCAGttacacattacatttaaaaaagcaattaacatttaattattgagacattttaatcaaactaTAAAAGTTCTTAAATGtccaacacaaataaaaacataaaaaattaaaaaacacagtcaTGTTAATGGATTAATCACAATGGGTACTAATGAGGtcaataaattacaaattattgaggtcagcaaattattaaggtcatgtccatatatAAAGTTTGATAAATTGATAATGATGTTATTGTGACATTctctgaaaatgtattttgaaaaatatgaagaaacgtgttttaaaggagaactccgatTTCTCAGTTTTAAAGGAGAAAAGCGATTTATGTGcaggggcaaattatgccccgttaaaacccattctagtcttttcagaaaaaaatgcacaaaattactgtaatctcggaaagctgcgggagaacggaggtgggctattcaaccaAGGTTAGTACtccttatcatgttttactacacaaaaagtcagttttacactggagttatCCTTTAAAAACATCTcaatactaaaaataaatcatatctACACACCATACagtatattgatattaaattattgtcTAGATCGATTTTATTCCAAATTAAATACCAGAACTGAATAATTGAAGTGATGTAAAATAACTTGGCTTACCGAGGTAAAACCATGGTGCTTCCATTCTCTCTATATTTCATTCCCTCGTTTCTTGTGTTTGAAGTTTTGAAGAtctcactgtgtttaaaacatctTGCACATAAACTGATGAACTGATTAAGCTCCTCAGGACTTGGGCATGCAGTTTTCATGAGACGTCCTCTCTGTGTGAAGAATGACTGACTATGTTGTTATGTCTGAGGAGCTCTGGGAAGGTGGAATACCTGTTATCAGAGCTTTACAATGGGAGAACGTGTAGGATATTTATACTTGTCTCATTAATgtatgtttaagtgtgtgttttgtttgtgtgtgtgtgtgtgagcgtatTTGTCAGAATTGCTATGTGTTTTGTATTCCACACTGAAGTTTGCAGGGTATTTTTCGGCAGTGGGTGGAACTAGACTGTGGTTTCTCACTGAAAACCCAAAAGCTGGGTGGTATGCCAGTTTCCCCCCAAGTGTTTTTACTATTTGTACTACAGTTCTACTGTCCAATCTGTGTTTAGttgttaaattatatacatGCCTGATGAaggatgttaaataaataaaagatttatCTAAACCA

Function

GO: NA

KEGG:

id description
K13707 ABHD15; abhydrolase domain-containing protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8875 lncRNA upstream 15537 25798918 ~ 25799741 (+) True G6516
TU8873 lncRNA upstream 18092 25796622 ~ 25797186 (+) True G6514
TU8810 lncRNA upstream 265593 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 311693 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 314093 25490214 ~ 25501185 (+) False G6445
XR_002650097.1 lncRNA downstream 37637 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 37696 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 133732 25960481 ~ 25997692 (+) True G6567
TU8947 lncRNA downstream 172468 25999217 ~ 26002978 (+) True G6574
TU8966 lncRNA downstream 221929 26048678 ~ 26051179 (+) True G6588
XM_007245926.3 mRNA upstream 40907 25764488 ~ 25774371 (+) True exo5
XM_007245924.3 mRNA upstream 52795 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 56512 25726169 ~ 25758766 (+) True vps53
XM_022670741.1 mRNA upstream 101846 25681076 ~ 25713432 (+) True mnt
XM_007245922.3 mRNA upstream 101846 25681105 ~ 25713432 (+) False mnt
XM_007245928.3 mRNA downstream 89488 25916237 ~ 25929253 (+) True aipl1
XM_015604938.2 mRNA downstream 103714 25930463 ~ 25945662 (+) False tusc5
XM_007245929.3 mRNA downstream 103719 25930468 ~ 25949493 (+) True tusc5
XM_007245938.3 mRNA downstream 290357 26117106 ~ 26121289 (+) True tmem199
XM_007245940.3 mRNA downstream 372170 26198919 ~ 26203484 (+) True gemin4
XR_002650083.1 other upstream 386927 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1907804 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1981448 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2463972 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 213407 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 213407 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 216310 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1092542 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile