RNA id: XM_007245928.3


Basic Information

Item Value
RNA id XM_007245928.3
length 2571
RNA type mRNA
GC content 0.45
exon number 6
gene id aipl1
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25916237 ~ 25929253 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCACACCACACTGCTCCAGCCAGCCCTCATACCTCAACCCAGACCTGCTGTGCACAAAACACACTTCTcgacacacacactgagctacagacacacatacatcatataaacatacacacacgctcAGAGACAGCATGGAGGACAGTCTGCTGCTGGGTGTGGAGGGGGTCAAGAAAACCATCCTGTATGGAGGAACCAATCAGATTCCCAAATTCATGGCTGGATCAAAGGTGACCTTCCACTTCCGGACCATGCTGTGTAACGATGATCGAACAGTGATAGACGACAGCAAAAAGGTGGGCGTGCCCATGGAGATGGTGTTTGGGAACATGTTCAAGCTGGACGTATGGGAAATCCTGCTCAGGTCTATGCGTATTGGAGAGGTGGCAGAGTTCTGGTGTGATATCATTCACACTGGCATGTATCCCATGGTGGCAAAGAGCCTGAGACGCATCGCAGAGGGTAAAGACCCTACGGACTGGCACATCCACACCTGCGGCATGGCCAACATGTTCGCCTATCACACCCTGGGCTACGACGACCTGGACGAGCTTCAGAAAGAACCTCAGCCTCTCATATTTGTGCTGGAACTGCTAAAGgttcaGCAGCCGAGTGAGTATGAAAGGGAGACCTGGGCTATGAGTGACAAGGAGAGGCTGAAGGCTGTGCCCGTGCTCCACGGCCAGGGCAACAAATTATACAAAATGGGCCGCCTGGAGGAGGCTATGAACAAGTACAAGGAGGCCATCATTTGTGTAAAGAATGTCCAGACAAAGGAGAAGGCCTGGGAGGCCCCCTGGCTGAAGCTCGAGAAGATGGCCAACACTCTCACGCTCAACTACTGCCAGTGTCTGCTGAGCAAGGAGGAGTATTATGAGGCCATTGAGCACACCACGGACATCATCAACCAACATCCTGGGACAATCAAAGCCTTCTACCTGAGGGGTAAAGCACACATGGAGGTGTGGAACGAGGCGGAGGCCAAGGCTGACTTTCAGAGGGTGCTGGATCTGGACCCAGGTATGAAGAAGCTGGTGAAAAAGGAGCTGACTGTTCTCAGCATGCGAatggaggagaagagagaggaggatagACTGAAATACAAGGGGATGTTCAGCggagcagcaccagcagcagctcaaTCAACTTCAGAACAAACACCAGGAGAGATGACCACAGACCTGGAATCTCCAGACAAGCCAACCACAGAACGAGGACTTCCAATACAAATGAGTCTAGAGGAAGTGACTCCAGAAGAAATGAGTCTTCAAGAAGAACCTCCTGAAGAAATGAGTCTAGAGCAAGAATCTACAGAGCACACTCATCCAGAACAAATACCTCCAGAAGAACTATTTGCAGTACAAGAAACTCCAGAACAAGAATCAGTTCTAGAAGAAACAGTTCCAGAACAAGAATATATTCCAGACGAATTAATTCTAGATGAATCAATTCCAGAAGAAATCATTTCAGAGGAATCCATTCCAGAAGAACAATTTCCAGAGCAAGACATTGCAGAACAAGCAACTCAGGAAGGGTCAATTTCAGGAGAAGAATCTCCGGAACAAGAAAGTACAAGACAAGCAACTCCAGAACAACCATAAGAAGAAGCATCAGAACAAAAGATGCTAGAGATGACCCTAAGGGATGCTGAAGACTCTTGAAGGCACATAAAAACATGTCTGACAAATATTTGTTGTTTTCCTATTTAGTGTTAAATACAGACATAAAAAAGTTTAAGAGTTTTTGTTCCAGTAAATGTTATATGTGCCCATtagaatttagtttatttagtatatttacacattgttacacatttaCTTCTTGAGTGGCATCATATTGAAGACTATTAGTAGAGCTGAAATTGTGGTAAAGCAATTTGCTTAAATGTAGTGCCTGAAGTGGAGCAAAAAAGTGCTGATTTTCCCCAGACAGCATAATTGGCCATGCTCattctggatgggtagatgggaCTATCTGCTGGCCAGCCCAGACATCCACTGGCTGATGTCTCAGAGTGAAGGACCTGGTGATTTCCTTATGGAAAAAGGGGCAGTGGCTGGCATTACATGTATCAAAGGGGGCATGCACTTGTCCTCACCCCTATTGCCAGGAGCATTATATGGCTATGAAAATTGGGTAAAACCATTAACTGTTTTATGGTTTGTGAAATGTcctgaaattaaaatgtaaaaaatcttaAGACATCCTGATTGGTTTTCCCTGCTTTAAATAGCTAGACTGACTCTCCGTTGTCTCACCTTTTTCCTGTGAGATTCTGattgaaaataagaaatatgtAATAGTTTTGTTGCAAATTTTGACTCTTTTCCAGTTCATGCAACAAGAAGGTGAGGCATAAAAAGGACTATTTAATTACACGAAATCCAGGAAATTTTTGAAGTAGTAGCAGCTTTGCATTGAGTAGACTGTAGAAGTGTCACTACTGTATGCCAATGCGAATCAGCCCACTTCAAGCACTGAATAAATGATTGCAATGAATGTAATACGTATATATCTGAACTTTTATATGCAGCTGAGCAGCATTATGTAATAAAGCCAATCCAGACTA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process

KEGG:

id description
K17767 AIP, XAP2; AH receptor-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8926 lncRNA upstream 27420 25864445 ~ 25888817 (+) True LOC111192696
XR_002650097.1 lncRNA upstream 28496 25864386 ~ 25887741 (+) False LOC111192696
TU8875 lncRNA upstream 116496 25798918 ~ 25799741 (+) True G6516
TU8873 lncRNA upstream 119051 25796622 ~ 25797186 (+) True G6514
TU8810 lncRNA upstream 366552 25548738 ~ 25549685 (+) True G6464
TU8939 lncRNA downstream 31228 25960481 ~ 25997692 (+) True G6567
TU8947 lncRNA downstream 69964 25999217 ~ 26002978 (+) True G6574
TU8966 lncRNA downstream 119425 26048678 ~ 26051179 (+) True G6588
TU9020 lncRNA downstream 192106 26121359 ~ 26173262 (+) True G6625
TU9032 lncRNA downstream 213956 26143209 ~ 26190247 (+) True G6635
XM_007245927.3 mRNA upstream 89488 25815278 ~ 25826749 (+) True LOC103033293
XM_007245926.3 mRNA upstream 141866 25764488 ~ 25774371 (+) True exo5
XM_007245924.3 mRNA upstream 153754 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 157471 25726169 ~ 25758766 (+) True vps53
XM_022670741.1 mRNA upstream 202805 25681076 ~ 25713432 (+) True mnt
XM_015604938.2 mRNA downstream 1210 25930463 ~ 25945662 (+) False tusc5
XM_007245929.3 mRNA downstream 1215 25930468 ~ 25949493 (+) True tusc5
XM_007245938.3 mRNA downstream 187853 26117106 ~ 26121289 (+) True tmem199
XM_007245940.3 mRNA downstream 269666 26198919 ~ 26203484 (+) True gemin4
XM_007245949.3 mRNA downstream 834492 26763745 ~ 26777988 (+) True appbp2
XR_002650083.1 other upstream 487886 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2008763 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 2082407 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2564931 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 110903 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 110903 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 113806 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 990038 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile