RNA id: XM_007245929.3


Basic Information

Item Value
RNA id XM_007245929.3
length 3908
RNA type mRNA
GC content 0.42
exon number 3
gene id tusc5
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25930463 ~ 25949493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGCGCTTGTGCACACATTGAAACAGAAGCTGGCTGAACGGGACAGCAACACAAAACTCTCTTAGGTGCATCCTCCTCCCCTTTCTGCACCACTGCTCTGTGTTCTGGCTCTGCCCGAAAAAAGTAACTTCACctcctgctttttgtttgaGGTGGGGGGTCTAATTTTCCCTCAAGGCTGAGAGATAGTGTACGATGGTCCTGTCCTGCGGGTGTACAGTGGCGTGGGGCTGCGGAGCTCCTGCGGGTCcgtgaagaagaggaagaggaggaggaggagcaaaCGAGTGAGCGAGGGAGAGGGTGAGcaagcgagcgagcgagcgcaAGCAATCAGGAGAGAAGaccgggcttgtgctgctgtccCACGGCTGTGACTGATGCTCTGCGTGATTTGAGCCCCCTGTTCGAGATCCATTCAGACCTACCTTGCAAGTCATTCAATCCTCAGGGGCAAGAATTTGAAAAAAGAACTGTTTGTTTCAAGTCTTTGTTTTTTCCGTCGTTGTTGGAGGCTAGACAAAATAcctacagacagacaggcaatGTTTATGGGACAATAATGGGAGTTTAGTACAGTCACGTGAATTAACAGTAGATTTGTTTCCTGCGGAAAGTGGAggggggctcgtccgggatcGTGGACTCTAGACCTGAAGAATGGCTATAAACACCGACAGCGGGTTTGAGAAGTCCCAGCTTGGGGGTAATGGCAGCACCCGTCCCACCGATTCCCATGAGACTGAGAAACTTCTAAGCCCTGTGATCACGGAACCCCCGACCGGAGATGGGGTTCCCGTAAGCATTGGGGCTGAAAAGGGACAGGACGGCGACCAGAATGGCCACGGGCTGCCCCTGAGGTCCGGCTCCATTGGGCAGCTTGGCTCAGCTCCCCTCTCACCGTCTCGGACCAGCCTGAGCCGTGCCTCGTCCACAGGCAATGCTGTACAAGAGCAGAGCAAGCCCCAGGACTATCTCTTACTGGTCATCTTCTCCTGCTTCTGCCCTGTGTGGCCGGTCAGCATTGTGGCGCTGGTGTACTCAATTATGTCCAGAAACAGCTTCCAGCAGGGGGATATGGATGGAGCGAGACGTCTGGGTCGCCTGGCTCGCCTCCTCAGCATCGTCGCCATCACCCTGGGCCTGCTTATGATTATAGTCTATGTAGTGGTGTCAGTAACTGGCAAATGAACGGAAAACACCCGCTTGAAGAGGAATGCAATGACCATCTACAGCAAATCAAAAAATCCAAACTACTAAATCAAAGTCCTCTATCTTATTAATTAAAgccaaaaacaacaaagaagGGGTGTAGCAAAAAGTCTATTTAAAAAGATCTATTTAAAGAGAAACGACGTGCATGCATTAAGTAATCGTGTGCTTgagaaaatagtaaaataaaacaaacactaggtttaaaaaaatggagaaTGGAGAGAGACTATTTGTCCGGTGTATGAGAGACTATGTTGTTCCTGTGAGGAACTGACTGGCTGAagaagaggatgaggaggatggGAATGAAACTGTTCATCAAGAATGCGAATGAGAAGACAAAGACTATGGACCATGATCTGCATCATAACCTTATATTAGTCCTGGTCTTGCAGTCCAAAAGTATACAGATGCACAGATTTATTTGCAATATAACTCTCTCttaatgtacattttatataacgATTTGTACGCTGAACTAAAATACAGCCACGGAAATGACCACGGGGCGAAGGAGTGCTGGACTGTTGCCTTGTCAGCGCTGGCTGCCTTGGGGCCTCGCTGACTTTGTCAAAGGGAAATGGAAACACAATTCTGAAGGGGaggagtttttttgtttgtttgtttgtattcttGATTTTATAGATTTTGATTATGAAAACGACCACCTGCATGTATGTGAATAGCCTGACGTCATCACTTCCCATTGTGGTGTTTTTGGTTCTGGATGAATAATGGTGGACGCCATTGGTATCTAGAGTGGAATGTACATACTGTGTGTTGAGGGGCGTGGCTTCTGTCATCTGCCTGGTCACCACTGGGAGCAGCCTGGGTTTTGTAAAACGCATGTGAACCTCTCTTTACTCTACACTAGCTGTTGAAGCATGGACAAACGTCTAGAGGCATGAAGAGGCCTGCACCGTCGTACATTCAGCACCGAGGCCCTCTGAGAAACAGAGCTAGTCACAGaccaccaccccccccaccaccacgtccccccccccccaaccctgTCTGATTACCACTAGTGCAGAATGCAAATCCGTTCCCGTTAAGGCTCCTGACTTGTATATGTATGCTATATATCCGTATATTTATACAACTATTTAGGCATGCCGTAGGCAGACAGTACACCTGTTTTCTATTGTCACCCAAAAAAATACACCATTTTACAAACAAACCTTGTGTTGTTTCAGGGATGATGCACTGGTATCATGACACACCTGACAGTATTTACTGCATCTCTGCAGCTTCTTCAACATTCATTCTAAGGCCAAACACAGTTGGAgacaatgctaaaaaaaaaaaaagagaaaacctcTATTAGTTGCCAACAGCTCTATATAATCAAGTATCTTACTGCCCCATTCATTGATTTAAAAGCACTTTATATTAATTCATGATTGgttaatcttattttttagcATCAAACCTACCAATGAAAGTGAACAGAAATGCTGGTTTTGTATCTGATTTCTTCTTGACTCTATATATTGCCTTTGGTAAAGACTGTTCACCtgcataaaaaacaaacaaacaaaaaacacaacacccAAGCATGTAATCACTGGATTTTCACTAATGTTCTTAAACCATTACAGAGCAATTCTCAAAATTTGGTGCCCTTTAAGTTTTTAATATACATGGATAATATGATTAATACTtataatatttgattttatcaatGAGAAATCTATAAGAAAACTGAATAATTGTAACTGATTCCCATTATGTAAAATATTCACATGCATTTAGTCTGTAATGCTAAAGAaactaaaatcaataaatatcaataaaaaatataaatgatttgGTATTTCTCCACTGACTGACACCTGAAGAATTGACCATCACAAAAAGAAAGTTTTCCTAAAATCCTCTTTAATGTTTCTAAATATTGCAGTATTTTCTCAAATCCATCAGTCCTTCACTCAGTCCCGTAACCCATAACACCCATTTCACATCAGTGTGAGAAAATGACCACTCTGAATCACTCTGGTTCAACAAAAGATAAGATTGTAATCCTTCTCCcctctatatattatattaaatatgtttgtttgtattaGCTTTTTAAACAAGCAAAATCTCCACTCCCATCATTACATTCAACCTCATAACATAATAAATTTTTGTAACAGAGTAAGagagttctctttttttttcactatatgtttatatgttcaTATGTTCACTAGCGTAGACAGAAATAAGTCAGTTATACACAAAATCTTCAAGCCCATAACATAAACTGAACAGCTGTAATGAACCAATGGTTGAACaactctattttatttattttcatcttCACAATGGGCACCCGCTCCTGAGAATGGCTCTACTGCCTTTTTTTTGCCTGTCTGTACAAATGAATGTATATGaacacaaaatgcataaaaaagtgTGGAAACTCCAGGAAACACAACAGGAGGGACGCTCTTCTCCTTTGTTTAAGTACTTCCTGTTCAACACGTCAGGTACTTGCTGTACACGATGGTACAGTGCCAATATTGACGAGATGCAAAAGTGCTGCTATGTGTCTGTAAAACTGTGACCTTCTTTCAGTCCTTTTCCTTTTGCTACCTTTATTCACTTTGgatattgattttctttttattattattattatttccacaGGTTTATTGTGTACTTCTGCATGTGTGGAATAAATGATAACATGCATGGTCCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8926 lncRNA upstream 41651 25864445 ~ 25888817 (+) True LOC111192696
XR_002650097.1 lncRNA upstream 42727 25864386 ~ 25887741 (+) False LOC111192696
TU8875 lncRNA upstream 130727 25798918 ~ 25799741 (+) True G6516
TU8873 lncRNA upstream 133282 25796622 ~ 25797186 (+) True G6514
TU8810 lncRNA upstream 380783 25548738 ~ 25549685 (+) True G6464
TU8939 lncRNA downstream 10988 25960481 ~ 25997692 (+) True G6567
TU8947 lncRNA downstream 49724 25999217 ~ 26002978 (+) True G6574
TU8966 lncRNA downstream 99185 26048678 ~ 26051179 (+) True G6588
TU9020 lncRNA downstream 171866 26121359 ~ 26173262 (+) True G6625
TU9032 lncRNA downstream 193716 26143209 ~ 26190247 (+) True G6635
XM_007245928.3 mRNA upstream 1215 25916237 ~ 25929253 (+) True aipl1
XM_007245927.3 mRNA upstream 103719 25815278 ~ 25826749 (+) True LOC103033293
XM_007245926.3 mRNA upstream 156097 25764488 ~ 25774371 (+) True exo5
XM_007245924.3 mRNA upstream 167985 25758935 ~ 25762483 (+) True rflnb
XM_007245923.3 mRNA upstream 171702 25726169 ~ 25758766 (+) True vps53
XM_007245938.3 mRNA downstream 167613 26117106 ~ 26121289 (+) True tmem199
XM_007245940.3 mRNA downstream 249426 26198919 ~ 26203484 (+) True gemin4
XM_007245949.3 mRNA downstream 814252 26763745 ~ 26777988 (+) True appbp2
XM_007245951.3 mRNA downstream 840116 26789609 ~ 26867159 (+) True usp32
XM_007245952.3 mRNA downstream 840116 26789609 ~ 26867159 (+) False usp32
XR_002650083.1 other upstream 502117 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2022994 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 2096638 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2579162 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 90663 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 90663 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 93566 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 969798 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile