RNA id: XM_007245952.3


Basic Information

Item Value
RNA id XM_007245952.3
length 7847
RNA type mRNA
GC content 0.47
exon number 34
gene id usp32
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 26789609 ~ 26867159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGCGCGTCACCGTGTCGCTGAGACCCAAACCGGAGTTTGGAGCAAAGCGCCGCGGATCCGCtgctcagaaagagagagagagagagagagagggagaaggagagggagagagagagagagacacacacacacacacacacacacacacagatagagagagagggtgtgtgtgatagagagagactgagagagacacGGGCACCAGGCAACAGGCGCCGCTCCCGCGCGCAGCGGACTCTATTTACATGACAGTCCAGTGAAATGAGGGCAACATGGGGGCCAAAGAGTCACGGATTGGCTTCCTTTCTTACGACGAGGCCGTCAGAAGAGTTACCGATGTGGAACTCAAGCGGCTCAAAGATGCCTTTAAAAGGACCAGCGGTCTGTCTGCCTACATGACACAGCAGTGCTTCTTCAAAGAGGTACTAGGTGATGGCGTCCCGTCCAAGGTTGCAGAGGTGATCTACAACTCGTTTGGAGGCACACCAAAAGGGCTACATTTCAACAACCTCATCGTTGGCCTGGTTCTGTTAACAAGAGGACGAGATGAGGAAAAAGCCAAATACATCTTCAGTCTGTTTGCCAACGACTCGGGCAGCTATGTTGTGCGAGATGAGGTGGAGAACATGCTCCGCTCTGTGGACGGGGAAGTGCCGCCCTCGCTGAAGAAGTGCTTCTTGGAGGGTGAGAAGGTGAATTATGAGAGGTTTAAGGGCTGGCTCCTGCAGAACAAAGAAGCCTTCACATTCTCCCGCTGGCTGCTCTCGGGCGGCGTGTGCGTCACCCTGACCGACGACAGCGACACGCCCACGTTCTACCAGACGCTGGCCGGAGTCACACACTTAGAAGAATCTGACATAATTGACTTGGAAAAGCGCTACTGGCTTCTAAAAGCCCAGTCCAGGACCGGCCGCTTCGACTTGGAAACCTTTGTCCCTCTGGTCTCGCCCCCTATTCATGCATCGCTAAGTGAAGGCTTGTTTCATGCCTTTGATGAGAATCGGGACAATCATATTGACTTTAAGGAGATATCTTGTGGGCTTTCAGCTTGCTGTCGAGGGCCTGTGGCTGAAAGACAGAAGTTTTGTTTCAAAGTGTTCGATGTAGATCGGGATGGTGTTCTGTCTCGAGACGAGGTGCACGAGATGGTGGTGGCCTTGCTGGAAGTATGGAAGGATAACCGCACCGACACCCTGCCGGAACTGCATTCCAATGTTTCTGACATCGTAGAAGATATCCTGAAGATGCATGACACTACAAAACAGGGGCACTTAACGCTGGAGGACTACCAGATATGGAGTGTGAAAAGCGCCCTCGCCAACGAGTTCCTCAACCTGCTTTTTCAGGTGTGCCACATTGTTCTAGGCTTGCGACCTGCTACTCCTGAGGAGGAGGGCCAGATCATCAGgggatggctggagagagagagcaggcatGGGCTGCAGCCTGCTCAGAACTGGTTCCTCATCTCCATGCAGTGGTGGCAGCTGTGGAAAGACTATGTTAAATATgACAATAAATCTATAGTGGTGGAACAGCCAGGAATACAGAGCAATGGCAGGAGAAGTCCTCCATCCACCACCAATGCTGACTCGGCTGTGATCAAAGCTGGAGCAGTGGCTCGTTCACTCAGTTCCCCTGGAGACAAGAATACAGACAGGACCTGGGAGTCCTCAGACAGCACCACTAACAGTCATATGCCACACGTGAGCTCCTCTGCTACGGACATCTGTTTTGCTCGGCAGCACAATGTTTTGGACAACAACAACCAGTGTTTCTCTTCTGCCAATGGACACTTGCCCAACCATCTGGTTGCACAGAGGCCTGGCGCCATTGACAACCAGCCCTTAGTCACCACTGAACCTGTGAAGGCACCCACGTTAACAATGGAAGGTGGGCGACTAAAGAGAGCCTTGCACCTGATGGCTGGCCGGGACTTCGAGACGGTACCAGAGCCGGTATGGAGGGCGCTATACCACTGGTACGGAGCCAACCTCAGCCTGCCAAGACCGGTAATCAAGTCTGTTGTAACAGAAGAGGCAGAACTGGAGCTCTTCCCTCGCTACTTGCTCTTTCTGCGACAGCAGCCTGCCACGCGCACCCCCCAGTCCAACATTTGGGTTAACATGGGCAATGTGCCATCTCCTAACGCCCCTCTGAAGCGGGTGCTGGCCTACACGGGCTGTTTCAGCCGCATGAGCACTATAAAGGACATCCACGAGTATCTGTCGCAGAGGTTACGCATCAAAGAGGAGGACATGCGTCTCTGGCTCTACAACAGCGAGaattacctcactctactggATGATGAAGATCATACATTAGAAAGTTTGAAAATTCAAGATGAGCAGCATTTGGTAATTGAGGTTCGAAATAAAGATATGAGCTGGCCCGAGGAGATGTCCTTCATTGCTAACAGCAGCAAAATCGACAGACACAAAGTTCCTACAGAGAAAGGTGCTACAGGCTTAAGTAACCTTGGAAATACGTGCTTTATGAACTCCAGTATTCAGTGCGTGAGCAACACCAAGCCCCTCACTGACTACTTCATCTCAGGAAGACACCTCTATGAGCTCAACAGAACCAATCCCATAGGAATGAGAGGTCATATGGCCAAATGTTATGGAGATTTGGTTCAGGAGCTCTGGAGTGGAACGCAAAAGAACATTGCACCTCTGAAGCTACGGTGGACGATAGCAAAGTATGCGCCAAGGTTCAACGGCTTCCAGCAACAGGACTCTCAGGAACTGCTGGCGTTCTTGTTGGACGGCCTCCACGAAGACCTGAATCGAGTTCACGAGAAACCTTATGTGGAGTTGAAAGACAGCGATGGAAGGCCAGATGCAGAAGTGGCCACAGAGGCTTGGGAAAATCATTTGAGAAGAAACCGCTCCATCGTGGTGGACCTGTTCCACGGCCAGCTTAAGTCCCAAGTCAAGTGCAAGACCTGCGGTCACATCAGCGCCCGCTTTGACCCCTTTAACTTCCTGTCTTTGCCTCTTCCTATGGACAGCTCAATGCACTTAGAGATCACAGTTATTAAACTAGATGGTTCCACACCAGTACGATACGGGCTTCGTCTGAACATGGATGAGAAGTACACAGGTCTGAAGAAGCAGCTGAGTGAGCTATGTGGCCTGAAACCTGAGCAGATCCTCCTAGCTGAGGTCCACTCGTCCAACATCAAGACCTTTCCTCAGGACAACCAGAAAGTGCGTCTGTCTGCGAATGGCTTCCTGTGTGCGTTTGAGATTCCTGTTCCTGGGTCTCCCACCTCAGTCACCTCTCCTACACCAACAGACACTACCCCGATGGTCAATGGCATTGCTGGGAACAGCCATGCAGAGAAACCTGGCCTAATTCCAAATGGTACGGCTGGTACGCCTGTACGCAGTGGCTCCGACAAAAACCTAGCCAACGGCATGCCCAGCACAGTGGTACCTTCTGCCTCAGAGAAAAGTCTTACCAACGGCATCCCCAACGGCCACATCACGCCGGTTCAGGACAGTCCCTTTATTGGCTACATCATAGCCATGCACAGGAAAATGATGCGGACCGAACTGTACTTCCTCTCGTCTCAGAAGAATAGGCCAAGTCTATTTGGCATGCCGCTCATCGTGCCTTGCACTGTGCACACCAGTAAAAAAGACCTGTATGACGCAGTGTGGATCCAAGTGTCCCGTCTAGCCAGCCCTCTGCCACCTCAGGAGGCCAGCAACCACGCCCAGGACTGTGATGACAGCATGGGTTACCAGTACCCTTTCACCCTGCGAGTGGTGCAGAAAGACGGAAACTCCTGTTCTTGGTGCCCATGGTACAGGTTCTGCAGAGGCTGCACAGTGGAGTGTAACGAGGACAGGGCAGCTCTGGGGAATGCCTACATCGCTGTGGACTGGGACCCCACCGCTCTGCATCTCCGCTACCAGACCTCCCAGGAAAGGATAGTGGAGGAGCATGCCAGTGTGGAGCAGAGTCGGCGAGCTCAGGCCGAGCCCATCAGTCTGGACAGCTGTCTGAAAGCGTTCACTAGTGAGGAGGAGCTCGGTGAGGATGAGCTCTACTACTGCTCAAAGTGCAAAACCCACCGCCTGGCCACCAAGAAGCTGGATCTCTGGAGGCTGCCGCCTATACTGATTGTTCATCTAAAACGCTTCCAGTTTGTGAATGGGCGCTGGATCAAGTCTCAGAAGATAGTGAAGTTTCCACGAGGAGGCTTCGACCCTAGTGCTTTTCTGGCCCCACGTGAGGCCGCCCAGAGCACATGGAGCCTGCAGAGCCATAGCGAATGTCTAGTGGAGGAGCTCCAGAGGCTGGACAGAGGAGACTCCTCTGTGTCTTCCATCTCCACAACCACTGTTGCCAGCCCACCTGTATCTGGAAGAGGCACTCCATGCTCAATTAGGAGGATGAACAGTCCACtgagcagaagcagcagcccCAGCAACAGCCCTAAGAACACAGGCCGCAAGCAGGGCCGGCTGCGTCTGCCCCAGCTGGGCAGCAGACACCGACTCTCCAACAGCAAGGAGAACCTggacagcagcagcatcagcagttTTAAGGAGAGCGGCCCAGAGCCGGAGCACAGCACAGGGACTGAGGTGGAGCCGCTGGGGCCGGGGGTCCCTGCAGAGTCTAACACGCAGGACACCTGGTCAGTAGATGCCTCCAGCACTGACTGTGATGTCATCATGGTGAACGGGCTGGGCCAGGAGAGCGGCCAAAGCAACGGCCACTCTGAGGCCAGCACAGAGCTGGACTGCACCTCTCACCAAAGAGACGACATCTGCCTGGAGCCCATATACGACTTGTATGCAATCTCATGCCATTCAGGAATAATGGGAGGAGGCCACTATGTGACCTATGCTAAAAACCCCAATGATAAATGGTACTGTTATAACGACAGCAGCTGTAAGGAGGTTCACTCGGAAGAGATTGACACAGACTCAGCATACATTCTCTTCTACGAGCAGCAAGGAGTGGACTACTCTCGATTTCTGCCGAGGACTGATGGCAAAAAAATGGCGGACACTACTAGCATGGACGAAGACTTTGAGTCGGACTACAAGAAGTACTGCGTGCTTCAGTGATCCCATGCTCTTCCACAAAACAAGGCACTTATAGTAGGTTTCATCAGTATCCCCCCCTGTGCAATGAAGACTGAAACAGCAGAGTGGCTCAGCAGAAACTGAGGAGCGACAGCTACTCTGAAGCACAAAGACCTGCTGGCTGACTGAAGAGGCTCCACTGCTGCCCCCTGTATCAGAAGACAGGTACTTGACTGCTGGCTGCTGGTATGGATGTGTTGTGCcagtgagtgactgagtgagtgagtgactgagtgagtgtTTTTGAGAGAAAGTGAGATTTGAGaactatatatattgttattgttgccaAGTGAACAAATAGGTTCTTGACCAGAAATCTCCATTCCCATGAAAATTCTTCTAACTAGCTGAACACTGCAATCCCCAAATCTGCAGAATCACACAAAcctattatatatttatgtatttatcttACCGTAAGGGTTGACAGCACTCTCATCTTATACATGCTTGAGTTTTATTGAGTATATTTATATGATGATCCATGACCCGTAAACACAGCTCTTACTGGCCAAACTCACATTCATTCAGTCCCAAGTTAGATTGATTAATCATAAGCTCAAATTTGGAGCACTTTCATTGACTCCTAACATTTTCCTGACTGACACTGATTGAATGTTAAGTTTAGAAAAGTACAGTGTTAACAATCtgaaatatacacatttaacagGTTAAACACTTTCCAAAGGCCTGTTTAATTAGTTCTTTATCTGAATCAAAGGTTTCTCAGTAGAACTTGtacactacctcactttatttccagttaattggttggttggttggttgttaaTGGGAAGCCTGCGAGACAGTATTACAATGTGAATGGCTCTATCTATCCCTTAGATAATAACACAAATATTGACTGAGCAAAGTCCTGCACGTTTCACTACCAAACGAAATTCCATTTTTGTGAgccacaaacacaaaaccactTCCATATGCCATTTCTAAATCATTGGATttattaaattgatttttttttttttaagtttgaagtTTATTTTTAGGTCCTGTGCCAGAGCCTCCCTCAAAGAGCCAGTATATCTCCttaatgtctttcttttttgtctttgtcttaatcagatttttaaatgataaccttttatttttcagccgtatttatttttaatagcgCCGATTCACTTTCGCCCGAGCACATCAGTCGCTGATTTAGCATGACTGTATGCTGGCGGCATTCCACCCATCACAGTGCCAGCCCCACTATTATCACCATTCAGCGATGCCATTACAGCTTCTAGAATGTTCGTACGTACTGTCGTCACTTTATTTCCAGTTGTAAGGAAGGTACAGTAAATGGTAGCCAAATGCATGCATATCTGATCAGTGTACTCTCAAGGGAGAGGTTCACATCATCAAGCCAAAGCTCTTAACAGGTGATGTATATGTTGTTGCGTAACACTCAGCTCTACTGGCAGAAGGCCTGTAGGAGAGATCTGCAGTTTATGTGAACTGTCTTCTCTGAAAGAACGTCTCGTCAGCACGGCTCGCCTTACGAAGGTCTTGTGCAGTGCTGAGAGAAAGCAGGGTCTACTGTAGAGAGGACCTGCTGAAGTTTGCGTGTCTGTAGACATGCAGGAATAATAGTAGCAACCCTGTGGAGACTCTTTATTAGAGAGCCATCTTTACACTGTGAAAATAGATATGAAAcattgaatgattttttttttttggtttgttttttttatttcttccctAATCACTTTTAATCACCTGAAAGAAATTGGGAAGGAGTTATATGAGTCGACCTATGCTGCTCCACTTCTGAACAGTTCCACGAAACAAATAACATGACTTTTACGGACATTtgcaatttaataaaaaaaattgtttatgtaaaaaggaagaaaaaaattgagagaaaTTACTAAGAgaactgtattactgtattttatcatTCACGTGATTTTGTTCCTCACGAAAGTAGTCagaaagcatcagttgtaagcAATGACATTTATGGCTTTAAAAACAAGCGCTGTCAAACGctgaaagaaaaatacataataaaggGCCCTATGATTTCTGTAATATGGACAACACTGATggaattacagaataaaagtttaaaacagacctcagaaataaacactgaatggtgtaaaaaagaaatttaaattaagaaaaaataaaacagaacttGTGAAAAGAAGAAACAGATATTATAGGGCCCTGGTAAACGCACAGTAGCTGAAAAGAATATGTCTATGGCTGTGTGACTATGTCTGTTTGACCGGAATCATTAGATCCTCCCAGTATGAAATCAGCATTCACTTGGAAAAACGAGTAGCttgttaattttatatttaactggAATCTTCCCCGCGGCTTATGAGTCTTTCATGGCCGCAAGTATACATgacttttaaagattttttttttttgatacagGGATAATTTATTCAGAAAATATGTGATCGGTTGGCAAAAAAGTAGTGCAATCAACTACTGACATTTGTCTTTGTTGTTCGTCGTTTTGTTAAATTAATTGGCAGAGATGTATTAATTTAAGGAACTTTATTTTGTAAAGTGTTAAACGGATGAAATGATGTTGCACTGACATAAAATGTACATATGATGTTTTGTAAATATGCCAATAAAAATTAtgtatttggaaaaaaatgagctgtaaaAAATTGTAGTTGTATATGAAGTGATGCCATTGATCTGTAACGAATATCAGAGCAACCAATTAAATGCAGCCGATGCCATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9142 lncRNA upstream 180867 26597659 ~ 26608742 (+) True G6711
TU9146 lncRNA upstream 189367 26583279 ~ 26600242 (+) False G6711
XR_002650106.1 lncRNA upstream 296873 26487773 ~ 26492736 (+) True LOC111192717
TU9069 lncRNA upstream 383679 26402779 ~ 26405930 (+) True G6666
TU9210 lncRNA downstream 22054 26889213 ~ 26891566 (+) True G6759
TU9216 lncRNA downstream 46242 26913401 ~ 26916530 (+) True G6765
XM_007245949.3 mRNA upstream 11621 26763745 ~ 26777988 (+) True appbp2
XM_007245940.3 mRNA upstream 586125 26198919 ~ 26203484 (+) True gemin4
XM_007245938.3 mRNA upstream 668320 26117106 ~ 26121289 (+) True tmem199
XM_007245929.3 mRNA upstream 840116 25930468 ~ 25949493 (+) True tusc5
XM_015604938.2 mRNA upstream 843947 25930463 ~ 25945662 (+) False tusc5
XM_007245950.3 mRNA downstream 76 26867235 ~ 26883997 (+) True LOC103040422
XM_022671028.1 mRNA downstream 76 26867235 ~ 26882730 (+) False LOC103040422
XM_007245954.3 mRNA downstream 18891 26886050 ~ 26888538 (+) True tmem97
XM_007245956.3 mRNA downstream 27499 26894658 ~ 26898301 (+) True rad1
XM_015604965.2 mRNA downstream 52132 26919291 ~ 26931495 (+) True LOC103042574
TU8949 other upstream 743363 26040156 ~ 26046246 (+) True G6576
TU8950 other upstream 743363 26040156 ~ 26046246 (+) False G6576
TU8951 other upstream 743363 26043059 ~ 26046246 (+) False G6576
XR_002650083.1 other upstream 1361258 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 2882135 23878152 ~ 23907474 (+) True LOC103022942
XR_002650136.1 other downstream 52132 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile