RNA id: XM_015604948.2


Basic Information

Item Value
RNA id XM_015604948.2
length 5329
RNA type mRNA
GC content 0.44
exon number 17
gene id mark4
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16561486 ~ 16617930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACGCTGTTGGGAGGGACGGTTGGGAGGGCAGCCTGAATTTCATACTGTGAGCGGAGATGTTCTGACGAACGTCTGTTTGggattatatatacatatgtagacatttttatttttttatacatattttagcTGTTTGGAGCGTCTTAGCCTCGGCGGACCGTTGGAGCGGCGGTAGCTAAgggtgggagagagagacatcCGTTTTCTTTCTTGTGTTTCTAGGTTAGcctagctaacctaacctaagcTGAGCTAGTTCAcacatctgctgctgctgctggatccTCAGCTTCTGCTGGGCTACTttagtcttttatttatttatttatttttcctggaAATGGGCGCAGATGACTCTTCTGAGGggacgctgtgtgtgtgtgagggagtggtGTGATTTAACCGAGACTCCGCTTTCTTGAAAAAAATagcttattttttcccctttattttgtttgttttaattatttgtttttacctcTTGTTTGGAGACgcagggacagagagagagagggaagaaaagagaaaccAGAGACACAGTAGAAACCGTGCCTGCGGACACAATAATGGAAACACTGGACTGGACTTGTTTTTATCGTTTGTCAGCAGAGAAAACGAGCCGTTCTTTCTCTCCAGGCAGATAAAGACgacaagaagaaagagaaagaaaggcacAGATTTAAAGGTTAAAGGCTGGACCCCTTCTTTTtcatcctttctctcttttccctcttttcTGGCTTTTTTCAGTATAGGGTGGTGAcacagcactgtgtgtatagctgtatatattgtatagtacTGGAAATGCGGATTGTTTGAGCGTCTACAGCTCTTTTGCAGCTTCTAAAAGGGGGGAAAGATCCCAGACCACCTTCATTCTTCATACTCAAGCCTCCTGCATGACCAGCTGGCTAGGAGCTAGTTAACTAACGtaactgactagctaactaacctagccATCCAGCCACAGTCTGTCTATCTGACTGTCTAAGCGAGGGCAGTGGCTGCCTCCAGCAAGAAcagtccagcagcagcagcagtgggtGTGAGATAATATGCAGGGGGGCAAATGACATCAGATCTGCTTTGTtggtccaaacacacacacacatatatatgtatatcgtacatacatatataagtaGAAGGAGTACGTAACGTGTGGTCGTCGGGagagaagacaagacaaaaaaagaggAGTGAAGTAAAGAAGAAGAGCTCAGGGACAATGTCTTCTCGTGCAGCCCTCCAGCCTGGGAACGACAGAAATTCAGACCATCATGCCTCTCTCTCGTCCAGTCGCTCGGAGAAGGGCTCAGCCTGGTCAAACCGCTCGCTTGGAGCTCGCTGCCGAAACTCCATCGCCTCCTGCTCAGATGAGCATCCGCACATTGGGAACTACCGGTTGCTCAAAACCATCGGCAAGGGTAACTTCGCCAAGGTCAAGCTGGCACGCCACATCCTGACTGGCAGAGAGGTTGCAATAAAGATTATTGACaaaacccaactcaacccaaccagCCTACAAAAGCTCTTTCGAGAGGTACGGATAATGAAGGGCCTCAACCACCCGAATATAGTCCAGCTCTTTGAGGTGATTGAAACCGAGAAGACCTTGTACCTTATCATGGAGTACGCCAGTGGCGGTGAAGTGTTTGACTACCTCGTAGCCCATGGGAGAATGAAGGAAAAGGAGGCGCGAGCTAAATTTCGGCAGATCGTGTCTGCTGTTCACTACTGTCATCAGAAGAACATTGTTCACAGGGACCTGAAGGCGGAGAACCTCCTGCTCGATGCAGACTCAAACATCAAGATTGCGGACTTTGGTTTCAGTAACGAGTTCACGCTGGGCAATAAGCTGGACACGTTCTGTGGCAGCCCCCCATATGCTGCTCCTGAACTCTTCCAGGGGAAGAAGTACGATGGGCCCGAGGTGGACATCTGGAGCCTGGGAGTTATCCTTTACACGCTGGTCAGCGGATCACTGCCATTTGATGGACAGAACCTTAAGgaGTTGCGTGAGCGGGTGTTGAGAGGAAAATATCGAGTGCCGTTCTACATGTCCACTGACTGCGAGGGCATCCTGCGCAGGTTCCTGGTGCTTAACCCCACCAAGCGCTGCACTCTGGAGCAAATCATGAAGGATAAGTGGATGAATGTTGGACATGAGGGCGATGAGCTGAAGCCACATGTAGAGCCTGTTGAAAACTACAATGATCCTGACCGGATAGATGTAATGATAGGCATGGGTTATTCCCGTGAGGAGATCAGGGAAGCTTTGACCACACAGAAGTACAACGAGATCACTGCTACCTACCTGCTGCTGGGCCGCAAGAGTGAGGATGGCAGTGAGTCCAGGTCAAGCAGTAGTTTGTCTCTGGCACGAGTCCGGCCCAGTCCTATAACCAACGGTACCAGTAAACACTCCTCCACCTCTACATCCAGCTCTGCCTCAGCTTCAACCTCAACCCACAGCAAGACCCAACGCAGTGCCTCCACCTACCACCGCCAGAGGAGACACAGTGACTTCTgTGGTCCTGCAGTGCCGACAGCTCACCCTAAACGCAGCCCCACCAGTGCAGGCGACTCGGATTTGAAGGAGGAGCGGTTAACTACACGGAAGACTAGCTGCAGTGTGGTGGGCAGCCGTAGTATTCCCCCTTCCAGCCCCATGGTTAGCACTGCCAATAACCCCAACAAGTCAGAGATCCCTGACCGCCGCAAGGAAGTTACTGTAACCACGAACAACATCCCAGCAAGTGCCATGACCCGCAGAAACACATATGTATGTACAGACCGCTCCAGCACTGATCGACACTCCTTACTACAGAACGGCAAAGAGAACAGCTCACTTTCACACCGGTTACCTCCAGCCTCCCCCTCCACCCACAGCATCGCCGGGGCAGGAGTAGCCTCTTCCTCCTCAGCCGAGCGTTCCCGCCTGACCCGGGGATCCACCGTCCGCAGCACCTTCCACGGGGGCCAGCTCAGAGAACGCCGGACCCCCACCCATGCCCCGCCCACCTCTCCTACCCTATCCCACGATGCCAGCCCCCTGCCCCACGCACGCAGCCGAgccacctccaacctcttcagTAAACTCACCTCTAAGCTCACGCGCAGGGTCACAGACGAACCTGAGAGAGTCTGCAGATCTCCGGTCACAAGCCCCAGAAGCAAAAAGTCAGGTTAAAAATACCAGGTAAAATCTGACTCGTGCTTGGTCCCCTTAGCATTGCTCGGAGTATATAGCATTACACACTTACTGAGTGAAGGTTTTGTGGTGTGCACTAACTGTATGAATAATTTAGAATAGACTCCCTCCCTTCATCTGTCCCCCTCTTTTGATCGGTAACAGTGTTTGATTCACAAAGCAGTATCCtctacacttttaaaaatagatgctacaaaggtttttttttacacttaacCCGTATATATTTGTCTGTAGTGGAGATGTGTGAAGGTCATCAACATTATAAAACCACTAAAAATATGGTTTTATGTAGTATATTAAGTTCAAATACTAAATAGAAACAAAGAATCTGGAAATTTTTGTCTGTTATGTAAACACTGGTAACTTACCAAGATACTGACTGTATTGtataaattttttattaaaaaataataatgtaacatacaaaaaacatgTCTTTAAGACCAGTAtctaaactgcaaacataacaaatatacacaatatacccccaatatacaaataaatatttgcaataaatatcaaaacaaaATCACACTAAAATTACTgcacacatttttattgtttaaaggatatatgatatgataaatTGTGTAAGATATGATAAAGCTCACCCTTTTGATCTTTTGATCCTAACCAtccttcacactcacacatcactGCTATAGACATTcatctttatggaaccaaaagtggttcatCTATGACATcactcatttaaagcatattttttaaGGGTGTAGTTTTTGGATATTGCTTGAAATATGAACTTCATAACTGAGAAACTCATTACAGAACTCATTACCATTAACCTGGAATGGTATGAAGGACATGCTCTgccctttttaattaaatgaatgatGTTCATCTGTAGTACTATAGTGCTACATCCCTGCtggttttgtttattatatgaTCATGTGTGATTGCAACAACACGAGTCCATGGCGCTGGTGAAGGTAATTATGTGTTCATACCTGAAGCATTGAAATTAAGCATTTTGTGAACGTGCAAGTATGCAGGCCTGATCCAGAAGATGAAGCATTTGTTATGCATGACAAATTATCAGATGATGGAGAGATGCTGACTGtgttatatacactgtataatacTGGTATGTAAATTGTAAGAAAACATACAACATAAATAGATAGTGGTTCCACTTTATGCCAGAAGAGGCTGACCAGATTCGACAGGTTTGGTGTCTAAATTTAGATTGTTAGTATTACAGTGACATTACCAGGCTAATGTGGCCAgtaagtaaaaactaaaaaaaacatgatttgtgtttttaaatttgttttatttattttatcccaAAAACAATACACCAGAATCTAGATTATGTAGTTATTTCAAATCTTATCATAAACTTATTTTCGTCATCGTAATTTGAGCAATTAGCTAATCATCACTGTCACGCAAAATAATCTCTACAGCTCTacagatgaagaaaaaacatcttAACGTTCAGTGCAAGGCAATTTAAAAGTCCGTTTGGAACATTTTTTGTATCCATTAATCATgaaatacaaggtttttgcatgacagtgacAACATGTAAACTGCTATTAACATTCTCTGAAGAACTGTTTATTCCACTACAAAGTAAGTTGTGTCTTCTCACTGTGGCAAAATCTTAAAAAGTATAACTTAAGtacagaaagataattcaataTATTATTGTATCTAATGTATCTAATATCTAATGTACAGTTTATTAGCGTATTACTGTAAACCAATTCTATTGTCCCATTCATTTGCAACGAAAGGCTAATTTATATCCCCCtctaaatttttttaaaagttgttttgatatgttatgttttgttatgcatctttttaatctatttctctctcccctccccctCTCATCCACTCACCCACCAACGTGCACATCATCTCacctctctttatctcactcATTCATCACTCATCCCAACGCTCCTCCATAAACCCCAACTCCCCCACTCACCCACCCAAACAACCCCCAATCCCCTTCTCTTTTCCCTCACAGTCGCCATTTATCTGGGCATCAAAAAGCGGCAGAGCCCCGGACCCCCCGATGCGGCTGGGATGTGAGAGTTCGGAGTCCACGGGATCCTGCGGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5707 lncRNA upstream 80835 16480335 ~ 16480652 (+) True G4214
XR_002649856.1 lncRNA upstream 194798 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA upstream 196470 16356675 ~ 16365017 (+) False LOC111192355
XR_002649857.1 lncRNA upstream 210936 16349607 ~ 16350551 (+) True LOC111192356
TU5647 lncRNA upstream 246550 16314112 ~ 16314937 (+) True G4167
TU5801 lncRNA downstream 65607 16679405 ~ 16681219 (+) True G4277
TU5862 lncRNA downstream 531123 17144921 ~ 17145205 (+) True G4331
TU5865 lncRNA downstream 540962 17154760 ~ 17155096 (+) True G4334
TU5868 lncRNA downstream 543846 17157644 ~ 17157851 (+) True G4337
TU5877 lncRNA downstream 575234 17189032 ~ 17189246 (+) True G4346
XM_015604962.2 mRNA upstream 19044 16538471 ~ 16542443 (+) True LOC107197545
XM_015604961.2 mRNA upstream 24964 16531349 ~ 16536523 (+) True LOC103030966
XM_022668852.1 mRNA upstream 24964 16533090 ~ 16536523 (+) False LOC103030966
XM_007245974.3 mRNA upstream 31245 16482196 ~ 16530242 (+) False exoc3l2
XM_007245963.3 mRNA downstream 19525 16633323 ~ 16643820 (+) True LOC103044410
XM_007245962.3 mRNA downstream 19525 16633323 ~ 16643820 (+) False LOC103044410
XM_022671138.1 mRNA downstream 75436 16689234 ~ 16691759 (+) True LOC111192859
XM_022669057.1 mRNA downstream 840552 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA downstream 840554 17454352 ~ 17873816 (+) True lsamp
TU5723 other upstream 15633 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 1399213 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1515103 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1522573 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1597904 14961173 ~ 14963583 (+) True G3736
TU5717 other downstream 5248 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 5248 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1458166 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 1787256 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 1789907 18403705 ~ 18403776 (+) True trnag-ucc

Expression Profile