RNA id: XM_007245984.3


Basic Information

Item Value
RNA id XM_007245984.3
length 2563
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC103022964
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16280969 ~ 16292120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaattttttttattatggcaAATCTGTGTCTTAGACAGTGTATTTATATTCATGTGATCATATTTATGTGATGTAGCAGTTCAGATGTCTAGGAAATGTTACTTAGCATTATTTAGTGTTACATTTCCCCAATAGTTCCCaatagtttataaatatattacacatattagTGATATGAAAAAATATGCCACACAAGTTTTTTACAGGattctgacagaagcaaatgtctGTCTGCTGAGATTTACTctggcagcttctatatgtTAAGAGGTACAATGTCGATTATCCCATTTTATCCCatcaaatcacattaaaacagtgattccattcattaaaattaattagATTAGCCTCCCAGCCTTATGCCCATCCCTAGCACTACATCTAGTTAGCAAAAGAAGCAGAACATGGCGGATAAATGCAgtctaaaaattaaaaatgcctAAAGCAAAGATTCTATGTTATTGAAcatggcaaggtgatgtgaattatGGGACTTAAAGTCCTGTAGTTTATGTGGGGGAGAACCTTCAGACtctgtaaagtttttttgtaaattagaaGCTTAAATAGCAAATTGctgttattttttgtcttttttttagtttgacaCTAGGGCTGCtctgtacatactgtacatgcagTGTAAATACTTctgaataaagtaacttttttcacAGGGAAGCCTAGTTATTGTTATATAGTTTAGAACTTGTATATTCGTAGCACTGTCAGTTCATATCCAAAACTGCTTAAGTCATCTGCCTTACTTGTTACACATTAAtccaaaacacagcacagcttTACCACACAGTATGTGGTTCCCAAGGTCATATGAGCAAATGAATCTGGAGGCTGATTTGGTGGTAGTCTCAGAGAACTGACAAATCAGAATGTAGTTTACAGATAGAGGGTGGGACGGAGCAAATGACCCCCTCCTCAGGAGTGTATGTGCGTGCTCACATGTACGCAGTGCTAAACCTGGAGTGTGTGACAGCGACGTGACCTGCGTGAACTAGTTTTACATAGTGAatatataatgatttttttaacaaggaaaactTTCTAGGAACAGTCAATAAAAtatctgagaaagagagaagtcaATTATTCAAAGATATCTGATAACAACATATAtgAGGTTTTCTGATCTGGTGATGATGAAAGCAGTGTTTTGGATGTGGAACAGTGTTGGTCAGCTGTACTTTCACTCCCCGCCAATAAGAGTATCACTTCCCTGTTTCCTCAGTTAATGTTCAAAAATGGAACTTTCATTTGCTGGTTGGTTTGTTTCACTTCAGTTCTGCTTTGCAACAACGATTAGAAAAGGGAAGAGATTCTAGAAGAGATTTCTGATCTTTCGGGCAGACAGCACCACCATGGTTTACTGTAAATCATCATTCTTCTGGATTTGCTTCACTGCTGTACTGGCTGGATGGGTTCTCACCCAATGTCCTGAATCCCACTGGACCACTAGTAGTGAGACAAGCTCAAACCACTCTTGTAACTGGACGTGCATGATTTTTACTATACAGTGGCCAGGAAGCTTCTGTCTGAGCCTGGAAAATAGAAACATCTGTAGGATCCCCGAGAATATTCACAACTGGACCATCCACGGCCTGTGGCCGATACGTACTTAtggctgctgtttctgctggCCAGTATTCCAGTCTCATCTTCAGGATCTGGAGCCAGAACTCTCCCAGCTGTGGCCATCACTCATTAAATCCAAGAGCAACTTTTCCTTCTGGAAAGACGAGTGGTTTAAACACGGAACATGTGCAGCCTGTGTAGAGAGCATGGGCTCTCCAGCTCATTATTTCAGAACCTCACTCAAGCTTCGGACGCTCTTCGATGTTGACAATGCCCTGGCAAACACCGGCATCAAGCCCTCCTGTAACATCTCCTATAAGCACGAGGAAATTCATGCTGCGCTCGGGCCGTTCCTGGGAAACAACTATGTGGTACAGTGCGTCAAGGACGAGAAGGAGCGAGAAGTGTGGGTTCAGCTGAAGATCTACATCTCTAAGAACATCACTCTTGGATGCCAAAAAGAGGAAACACTCAAGTTTTCCAGAGCATCCAACACTTCTTTGGGACATCCCTGTCCAAAGAACACCACTATATTCTACTTCCCTTTAGACCGTGAGCATCCCAAACAACCCTGCCCCTGAAACTAGATTAGCTCCGGCTTCAGCTCTAAAAGAGTTTTCCAAGGAAGCGAAGATTAAGAATTTTGAGCTGCTCATCCAGCTCCATTCGGACGATGCCATCCTCTCCGTCGATACTGAGCAGGACACCTGTGGCCTCCCGGTCTTCTCCCAGAATCACCTTCACCTGAATAAAACACCGGCACAtcacagaataaataatattgtattttttattaggataatgattttaataaaatagcacaGTAGTGCAAAAATACCTTTTGAAAGagcaacaattaaaaaataaataaataacatgtcTTCACTGTCGTCACAGTCTGCTTAGTTCTGTCTGCTGTTAAATAAGTAAACTAACTTCCATATTAAATCTGGAAAGTGTGGAATgcaa

Function

GO:

id name namespace
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5583 lncRNA upstream 123436 16156512 ~ 16157533 (+) True G4120
TU5297 lncRNA upstream 392602 15886114 ~ 15888367 (+) True G3917
TU5246 lncRNA upstream 454866 15794783 ~ 15826103 (+) False LOC103040601
TU5242 lncRNA upstream 483666 15794783 ~ 15797303 (+) False LOC103040601
TU5273 lncRNA upstream 508465 15763244 ~ 15772504 (+) True G3894
TU5634 lncRNA downstream 1391 16293511 ~ 16310645 (+) True G4158
TU5635 lncRNA downstream 3128 16295248 ~ 16310645 (+) False G4158
TU5643 lncRNA downstream 19821 16311941 ~ 16312669 (+) True G4164
TU5647 lncRNA downstream 21992 16314112 ~ 16314937 (+) True G4167
XR_002649857.1 lncRNA downstream 57487 16349607 ~ 16350551 (+) True LOC111192356
XM_007245980.3 mRNA upstream 4136 16271162 ~ 16276833 (+) True LOC103022345
XM_007245988.3 mRNA upstream 69464 16205897 ~ 16211505 (+) True dll3
XM_007245989.2 mRNA upstream 88401 16159758 ~ 16192568 (+) True timm50
XM_022668921.1 mRNA upstream 88401 16161349 ~ 16192568 (+) False timm50
XM_007245993.3 mRNA upstream 211840 16007665 ~ 16069129 (+) True LOC103025893
XM_007245975.3 mRNA downstream 162564 16454684 ~ 16477105 (+) True LOC103047564
XM_007245974.3 mRNA downstream 190076 16482196 ~ 16530242 (+) False exoc3l2
XM_007245973.3 mRNA downstream 198939 16491059 ~ 16530242 (+) True exoc3l2
XM_015604961.2 mRNA downstream 239229 16531349 ~ 16536523 (+) True LOC103030966
XM_022668852.1 mRNA downstream 240970 16533090 ~ 16536523 (+) False LOC103030966
XR_002649582.1 other upstream 1118695 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1234585 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1242055 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1317386 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3296700 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 250822 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 326926 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 326926 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1779844 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2108934 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile