RNA id: XM_022668921.1


Basic Information

Item Value
RNA id XM_022668921.1
length 1734
RNA type mRNA
GC content 0.49
exon number 10
gene id timm50
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16159758 ~ 16192568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCGGTGTTGTGTACATATTCGGTGAGTTAATCCTCTGGGACTGTTCTGGGATGAGGACTCCAGCATTTTACTCTAATAGGCTTTAAAGGATTTTCACAGAAGGATTTTGGATTATTTGAAGTGTTGTCTTTGGGCTTGTGGACAAGGTAGCAATTCTGTGGATGAACAAGGAAATAAGattCCAGATGAGTTTGATAAAGAAGTTCCAGTAGTTCAGCAGCTCAAGAGGACATTCAGATATTTCAAAGATTACCGACAGATGATCATTGAACCCACAAGCCCGAAGCTTCTTCCAGACCCACTGAAGGAGCCGTACTACCAGCCTCCGTACACGCTGGTTCTAGAGCTTActgatgttctcctccatccagAGTGGTCGTTGGCCACAGGCTGGCGGTTTAAGAAGAGGCCGGGTATAGACTACCTGTTCCAGCAGCTAGCGCCTCTCTACGAGATAGTCATCTTCACATCAGAAACAGGCATGACGGCGTACCCCCTGATTGACAGCATAGACCCCCAGGGCTTTGTCATGTACCGTCTTTTCCGGGATGCCACGCGCTACATGGAAGGGCATCATGTGAAGGATGTGTCCTGTCTGAACAGAGACACCTCTAAAGTGATTGTGGTCGACTGCAAGCGGGAGGCCTTCAGCCTGCAGCCCTTCAACGGCATGGCGTTACGCAAGTGGGATGGCAATTCGGAAGACCGCACACTTTATGACTTGGCTGCATTTCTAAAGACAATCGCAATGAGTGGTGTGGAGGACGTGCGTACAGTGCTGGAAAATTACGCCCACGAGGAGGACCCCATCGAGGCCTTCAAAAGAAGACAAGCCCAACTTGCACTGgaggaggagcagagGCTGGCGGAGCTTTCTCTGCACAAGAAACAGGGCTTATCTTTCAGCTCCATCACGAGCCGCTTCTGGCCCCGCAAGCAGCAGTGAGGACTCCTCTCGCTCGCAGCCTCCAGCCGCAGTCCACTCCGGGACCTGACTAGCCAGCGGGACGGGGCTACAGTCGCTGCAGTGGACGGCGTATCCAGGCGTGCTGGAAGGAGGGAACAGAAAGAGAGGCGGGACATGAGGGggggaataaaaaataaaaaaacatccacATCCAGTATGTTTCACCGAACGGTCGTTACCATGttttggggggtgggggttaaAAGGGGCCCTGCTCCAGATAAACATCCGGTACCGTCGTGATGGAGAAGGAAGGCATTCCTCGGACTGCACACCCAGCCGACAGCCTGCCCTCGTCTAATCTCATTTGTTCTGTTTGTCACTGATTTCTGTCGTCTACACATTGTTGCAAGAGTTGGACTGATTTCGGCTCATCTCTCAGCTCATTTGTTGTTTTCTACTCATGCAGAACTACTTTAGCAACCACGCCCTGTATTGGAAACACTCTGAACTGACCTGAAGATTAGGTGTCCTGTAATAGCCTTAGTTAAATGCTGTATTGGAGGACTGGAGTGTGGTTGCCCATTCTGCCTGCTGGAGATATTGAGTTGGGCACTACTCTTGCTGCTGGAAAGACTGCATTTCTCCATGTCTAAGGATACCAAGTCTATATAGTTCATATCAAGTGAAGTCAGGTCGTGTAGTAAGATTGACAGGGGGTCATTCCTGTCTTGAGATGTGCTTGTTGATGGGTCTATGTATTGCATTTGATGTGAACCTGTTAAATGACCTTCAATAAATAAAGTATGTATGACTTTccataaa

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007006 mitochondrial membrane organization biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0015031 protein transport biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5583 lncRNA upstream 3816 16156512 ~ 16157533 (+) True G4120
TU5297 lncRNA upstream 272982 15886114 ~ 15888367 (+) True G3917
TU5246 lncRNA upstream 335246 15794783 ~ 15826103 (+) False LOC103040601
TU5242 lncRNA upstream 364046 15794783 ~ 15797303 (+) False LOC103040601
TU5273 lncRNA upstream 388845 15763244 ~ 15772504 (+) True G3894
TU5634 lncRNA downstream 100943 16293511 ~ 16310645 (+) True G4158
TU5635 lncRNA downstream 102680 16295248 ~ 16310645 (+) False G4158
TU5643 lncRNA downstream 119373 16311941 ~ 16312669 (+) True G4164
TU5647 lncRNA downstream 121544 16314112 ~ 16314937 (+) True G4167
XR_002649857.1 lncRNA downstream 157039 16349607 ~ 16350551 (+) True LOC111192356
XM_007245993.3 mRNA upstream 92220 16007665 ~ 16069129 (+) True LOC103025893
XM_007245994.3 mRNA upstream 92220 16007668 ~ 16069129 (+) False LOC103025893
XM_022668904.1 mRNA upstream 208666 15945728 ~ 15952683 (+) True LOC103027191
XM_007245997.3 mRNA upstream 220957 15934508 ~ 15940392 (+) True LOC103026903
XM_007245999.2 mRNA upstream 268519 15890205 ~ 15892830 (+) True LOC103027482
XM_007245988.3 mRNA downstream 13329 16205897 ~ 16211505 (+) True dll3
XM_007245980.3 mRNA downstream 78594 16271162 ~ 16276833 (+) True LOC103022345
XM_007245984.3 mRNA downstream 88401 16280969 ~ 16292120 (+) True LOC103022964
XM_007245975.3 mRNA downstream 262116 16454684 ~ 16477105 (+) True LOC103047564
XM_007245974.3 mRNA downstream 289628 16482196 ~ 16530242 (+) False exoc3l2
XR_002649582.1 other upstream 999075 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1114965 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1122435 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1197766 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3177080 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 350374 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 426478 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 426478 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1879396 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2208486 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile