RNA id: XM_007245994.3


Basic Information

Item Value
RNA id XM_007245994.3
length 2471
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC103025893
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16007665 ~ 16069129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGAAGAGGAACTTTgatcaatctggcaacccagtgaATATGACGCGCTTTCTATGAGATACAGTTGTGGTGAAAGCAGCGTCGAGCTGATCGGACTGTCGCATTTTCCAGCGCTGAACAGAGCGATAAACGCCAGGAATGTGTGCTCGGCGCTGCGCTGCGGACCAGAGGAACAGCCGGAGCAGCTAATCTCCTCTCCCGGGACGGCTCTTCTGGATTAGacCTGATGGAGCTGGGCACACGACAAGAGCTGCAGGCAGCAGATCCTGATCTCCACTTGTCCCACGCCAGGGGCTGGTGAAGAACGGGCATCTTCCTCAACCCCTTTCCCCTTCCCCTCGTCCAACGTCATCCCCCCCACCCCTACCTCTTCTAAAGCCCTCGTCCAGCCTGCCCCTGGCTCCTCTACCTGCCCCTAAGATGATTGGCAAGCTGAAGCAGAACCTGCTGGTGGCCTGCTTGGTCATCAGCTCTGTCACAGTGTTCTATCTGGGTAGGCACGCCATGGAGTGCCACCAGCGTTTCGAGGAGCACGGCCAACCGCTGCTGGGCAGCCTGCACGCCACGCTCCGTACGGGCCATAACCTCAGCAGCCCCTTTGTTTACAACAAGGACATGCCCCTGATCTTCATCGGTGGTGTGCCTCGCAGCGGCACCACGCTCATGAGAGCCATGCTGGACGCCCACCCGGAGGTGCGCTGCGGCGAAGAGACCCGCGTCATCCCTCGGATCCTGGCCATGAAGCAGATGTGGAGCCGCTCGGGCCGGGAGAAGATGCGCCTGGACGAGGCCGGGGTCACCGACGAGGTGCTGGACTCTGCAATGCAGGCTTTTCTCCTAGAAATCATTGTGAAGCACGGTGAGCCGGCAACGTACCTGTGCAACAAAGACCCCTTTGCCCTCAAGTCCCTCACGTACCTAGCTAAGATATTCCCGCGTGCCAAGTTCATCCTCATGATCCGCGACGGCCGGGCCTCCGTCCACTCCATGATCTCTCGCAAGGTGACCATCGCCGGCTTTGACTTGAACAGCTACCGGGACTGTCTCACAAAGTGGAACCGGGCCATTGAGACCATGTACACTCAGTGCCTAGAGGCGGCAGACAAGTGCCTGCCCGTGCACTACGAACAGCTTGTTCTGCATCCGGAGAAGTGGATGAGGACGCTGCTAAAATTCCTCAACATTCCTTGGAACGAGGCCGTTCTGCATCACGAGGAACTCATCGGGAAAGCAGGAGGCGTGTCGCTCTCCAAGGTGGAGCGCTCCACAGATCAGGTGATCAAGCCCGTCAATGTGGAGGCCCTGTCCAAGTGGGTGGGAAAGATCCCAGTGGATGTGCTTCGGGACATGCCGGTCATCGCTCCCATGCTGGCCAGGCTTGGCTACGACCCCCACGCCAATCCGCCTAACTACGGTCGGCCAGATCCACACGTCCTGGACAACACTAGAAGGCTTCAGAAGTCTTCAGAAAAGCCAAATCCAAGTTAGGATGATCACAGACATTGAACACACCCATGGAACActcaggagcagcagcagtgggaCCACAATGGACTTACACGGCCCCCGCTGGGACCTCctcattcaaacacacacacacatacacacacacacacacacacacaaaatcaatCACACACTGGCACCTTcatgcctacacacacacacacacaccactcacagcCCCATGGGCCTGGACCACTTTATGGAGAACTTTTGGCCTTTGATGTTGTACTCTGACAATTGTGGCCTAAGAATGTCAATGCTATCTtgaatttttctcatttttattgatttgtttttattatttttttatttggtcacACCATACTTGTACTCGTTTCCTGGCTACATAAATCTGTGATTCTGTTATAAgaaaatacagtgaatagcaAAGGAAGTATTTATGGACGTTACGAAAGTTAGCTTTTGAAGATGCGATATCTATTTTAATGTTAAGTTTACTTTCATGCCTTTTGTAATGTGCAATTCCTTGGGTGCTCCTGTACAAGATCCACAGTCTCGAGGCTCAGATGGCGGCGAAGCACAAAACTGCATTTCATGCCCCTCATTCACAGCAGTGGTATTTTGTAGCCTGATAAGAATTGTCAGTGTTGAAGGCAAGATAATTGctcataatgtttttatttccattggaGGAAAAAATGGGATGTCAaatataaaatgctttttttgtacTGAAGTGTAAAACATcattgccaattttttttttatttttttttttgggggtgaAATAAACACTTGAGCGCTGTAGGCTGCTAATGTGCCCAGAGCAGTATCCACTACATTTGAGGATGTTTCACAGTCTTGTATGTCTTTTTTTCTGGACTATATGATCATGAATCTAAAAGCTTTTAATACAAAGGGGCCAAAGCGCTTATAGTCTCCAAAAAGAGTTTTCCGTGGAGCATTCAGACTTCATCTCTATTAAATTGTTACATGGTCTGTT

Function

GO:

id name namespace
GO:0006478 peptidyl-tyrosine sulfation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008476 protein-tyrosine sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5297 lncRNA upstream 119301 15886114 ~ 15888367 (+) True G3917
TU5246 lncRNA upstream 181565 15794783 ~ 15826103 (+) False LOC103040601
TU5242 lncRNA upstream 210365 15794783 ~ 15797303 (+) False LOC103040601
TU5273 lncRNA upstream 235164 15763244 ~ 15772504 (+) True G3894
XR_002650144.1 lncRNA upstream 343320 15660210 ~ 15664348 (+) True LOC111192856
TU5583 lncRNA downstream 87383 16156512 ~ 16157533 (+) True G4120
TU5634 lncRNA downstream 224382 16293511 ~ 16310645 (+) True G4158
TU5635 lncRNA downstream 226119 16295248 ~ 16310645 (+) False G4158
TU5643 lncRNA downstream 242812 16311941 ~ 16312669 (+) True G4164
TU5647 lncRNA downstream 244983 16314112 ~ 16314937 (+) True G4167
XM_022668904.1 mRNA upstream 54985 15945728 ~ 15952683 (+) True LOC103027191
XM_007245997.3 mRNA upstream 67276 15934508 ~ 15940392 (+) True LOC103026903
XM_007245999.2 mRNA upstream 114838 15890205 ~ 15892830 (+) True LOC103027482
XM_022668835.1 mRNA upstream 210359 15781638 ~ 15797309 (+) True LOC103040601
XM_022668890.1 mRNA upstream 232716 15770277 ~ 15774952 (+) True LOC111192347
XM_007245989.2 mRNA downstream 90629 16159758 ~ 16192568 (+) True timm50
XM_022668921.1 mRNA downstream 92220 16161349 ~ 16192568 (+) False timm50
XM_007245988.3 mRNA downstream 136768 16205897 ~ 16211505 (+) True dll3
XM_007245980.3 mRNA downstream 202033 16271162 ~ 16276833 (+) True LOC103022345
XM_007245984.3 mRNA downstream 211840 16280969 ~ 16292120 (+) True LOC103022964
XR_002649582.1 other upstream 845394 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 961284 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 968754 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1044085 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3023399 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 473813 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 549917 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 549917 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2002835 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2331925 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile