RNA id: XR_002649973.1


Basic Information

Item Value
RNA id XR_002649973.1
length 1786
RNA type misc_RNA
GC content 0.47
exon number 13
gene id LOC103041654
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22642610 ~ 22673984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagtgtgacgtgttaaagtattcagccccccttATATCAATACTTTGTAGAGCCAACTTTACCCTGCAACTTATAGAGACCCATTTGTCCATACTAAACAGCTCAAGATcgttatttctaatttcttatttcagtgttttcaatctattttaaactgtaaatattcggctgcactgtaaatgagggtcatcCTCAATGTaatcccgagtgaaaataatgATTGGATATTCTGGGATGTAAAATCACCTCTAATATTGTGTTGAGTATTTGTTGCATAAGGTGTAGCAGCATCCTATCAGAAGATTTTGTCTTCTGgtggaaataaattaatttgtatatttaacatttcttaatttacactgttaatCACTCTGTGAGGTCGAAACATTCCGATTTTAGCCGAATTTTAACGAACTCGGGTCTAACGCAACTTCGGAAAACGATCCGAAGTTTAAAACTGCATTCCCGACTGGAGCCGAGTGATCACGAACTGCAGCCGAAGATAGACGCTTCTCGAAGTTTCCCGAACCGTCCGCGAGTTACCGGCGTTTCTTTAGCCGgcaaaccaaacacacacagagcaagctcctgtctctctcatacacttacacatactcttactcacacacacgcgcacgcacGCGCGCAAACTATCTATCCCTCTCCGTGTTTTATCCGCtaatctgtgtttgtgtgtgttataatgtcAGAGCTGTGTTATAACCGGGGCTGCGGGCAGCGCTTCGATCCGGACAGAAACCCTGAGGatgCATGCACTTTTCATCCCGGGGTTCCAGTGTTCCACGATGCTCTGAAGGGCTGGTCCTGCTGTAAGAGACGCACAACAGACTTCTCAGATTTCCTTAACATTGCTGGCTGCACTAAGGGTTGCCATAATAAGGAAAAACCCCCAGAGCCTGTGAAGCCAGAGGTAAAGTCTTCTGGAGAGAAGAAGGAGCTGGAAGACCTGAAGCCCCGTTTTGATGAGTACATCATTCAGGCTCCAAAACCTCTGGAGTTCATCCAGAGACCCAGTGCTGAGGAGCCACTGGTGGACCTGCAGCAGAAGGTTTCACCGTCCCTTCAACAGGCACTTGAAAAACTCAAGCTAGCTGAGACAAATGCGAGCACAGAGAAAGTCGAGGATGGAAATGAAGTGAAATACGGAACGGTGTGTAAAAACAGAGGCTGCTCTAAGAAATTCTCCGGACCAAAGAGCGACGAGGAGACATGTGTGCATCACTCTGGGGTGCCCATCTTTCACGAAGgGATGAAGTACTGGAGCTGCTGTCAAAAGAAAACATCAGATTTTAACTCATTTCTGTCTCAGGAGGGCTGCAGCAAGGGCTCTCATGTGTGGAAGAATGCAGATGGGAAGAAGGTGGTGCCCTGTCGGTTTGATTGGCACCAGACTGGCGGTCAGGTGACCATCTCAATCTACGCTAAGAACTGTAACCCTGAGCTGTGTTCAGTGCAGGCCAACAGCActactgtgtgtgtgcgtgtggtgtTCGAGGTGGAGAAGGAGTTTGAGCAGAAGCTGAgtctgtgggggGTGATTGATGTCAGTAAGAGTGTAGTTAACATCATGGCTTCCAAAATTGAAATCTCCATGAAGAAGGCGGAGCCTATGTCATGGGCACGGCTGGACCTGCCCCCTGCACAGCCTCCAACCAGTGGTGAAAAGAAGGGCGGAGATTGAAAGAGCCTGGAGAGACTgtctaaACAATCTCATCTCCACTGAAACTGCAGAACCATTACAGCAACATCAGGCTAATGCAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7339 lncRNA upstream 117864 22521606 ~ 22524746 (+) False LOC103043812
TU7342 lncRNA upstream 145708 22481707 ~ 22496902 (+) True LOC103043812
TU7351 lncRNA upstream 145708 22481707 ~ 22496902 (+) False LOC103043812
TU7346 lncRNA upstream 204592 22434783 ~ 22438018 (+) False LOC103043812
TU7321 lncRNA upstream 296828 22344076 ~ 22345782 (+) True G5455
TU7548 lncRNA downstream 42277 22707113 ~ 22707769 (+) True G5595
TU7581 lncRNA downstream 158035 22822871 ~ 22824066 (+) True G5619
TU7587 lncRNA downstream 237930 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA downstream 237930 22902766 ~ 22917835 (+) False G5620
TU7604 lncRNA downstream 240302 22905138 ~ 22905655 (+) True G5628
XM_007248583.3 mRNA upstream 756 22629061 ~ 22641854 (+) True LOC103041960
XM_022669802.1 mRNA upstream 14582 22607823 ~ 22628028 (+) True numa1
XM_022669805.1 mRNA upstream 15806 22607823 ~ 22626804 (+) False numa1
XM_007248584.3 mRNA upstream 38049 22595001 ~ 22604561 (+) True lamtor1
XM_007243028.3 mRNA upstream 48053 22587190 ~ 22594557 (+) True LOC103031483
XM_022669826.1 mRNA downstream 7219 22672055 ~ 22692671 (+) True nox4
XM_007248599.3 mRNA downstream 44076 22708912 ~ 22758213 (+) True LOC103045948
XM_007248600.3 mRNA downstream 98501 22763337 ~ 22770650 (+) True ctsc
XM_007248601.3 mRNA downstream 106963 22771799 ~ 22778305 (+) True rab38
XM_007248674.2 mRNA downstream 117256 22782092 ~ 22783649 (+) True tas2r4
trnag-ucc_6 other upstream 51120 22591419 ~ 22591490 (+) True trnag-ucc_6
trnag-ucc_5 other upstream 52038 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_4 other upstream 53079 22589460 ~ 22589531 (+) True trnag-ucc_4
TU6745 other upstream 1643410 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 2091001 20549217 ~ 20551609 (+) False LOC107197594
XR_002649977.1 other downstream 44076 22708912 ~ 22758213 (+) False LOC103045948
TU7588 other downstream 246187 22911023 ~ 22923081 (+) False G5620
TU7589 other downstream 246187 22911023 ~ 22923081 (+) False G5620
TU7634 other downstream 299224 22964060 ~ 22964924 (+) True G5646
TU7839 other downstream 647676 23312512 ~ 23351306 (+) False G5797

Expression Profile