RNA id: XM_007248586.3


Basic Information

Item Value
RNA id XM_007248586.3
length 1779
RNA type mRNA
GC content 0.48
exon number 7
gene id aasdhppt
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22506867 ~ 22515457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTCtgaagctaatgctagtgctaatGGTATAAACCGGGTTTTACGCTAAATAAGCGCGTGAAACTGTCAAAAACCGCGGCAGCTGTTCCTGAGCCCTTAGATCTGGGGTGTGTTTAGCAGCTCTCAGTTCTCAGTGAAGTCCAGTGTGAGGATTTTCCCATCAGAATGTTCCTCCCCTTTTCTCCTGTTGGTTAACAGACTCCTCCCCATTTGTGGGATAACTCCGGATGGAGGGTGTGCGCTGGGCGTTCCGCTGTGGCGCCTGGTCCCCATCACGCTCTGAATGGCTGCTGGCTGCCCGCTGCATCCAACAGGAGGAGAAGAACCGGATTGGACAGTTCATTTTCACCAAAGATGCCAAATCAGCCATGgCAGGGCGTCTGCTGATGAGGAGGCTGGTGTGTGAGAAGGTGTGTTTGCCATGGGACGGCTTCCGTTTGGGGAGGACAGAGCGAGGGAAGCCGTACCTGGCCGAACCTTCTAGCCCAGGTTCTCTTCACTGGAACTTTAATGTGTCCCACCAAGGGAATTATGCTGTACTGGCAGCAGAACCGGGGCGGCAGGTGGGAATAGACATTATGAAGACCACCAGACCAGGCAGCAGCACAGTGCAGGAATTCTTCCGGATCATGACCCGGCAGTTTACAGAACTGGAATGGAGGACAATCCGATCAGCCGGATCTGACTGGGATCAACTGGCTATGTTCTACAGACACTGGGCTCTGAAGGAGAGTTTCATCAAGGCGATCGGTTCAGGCCTAGGCTTTGACCTgcagagggtggagtttcacaTCTCACCCAATCAGCTACAAGAGGGGCGGGTCTACTCCCAGACTAGAATGCACCTGGATGAGGAGCAGGAGGATGGCTGGACCTTTGAGGAGTGTTTACTGGATAAACATCATCACGTTGCCGTGGCGCTGGGAACGCCGGAGGGTTCCGTCTATAAAGATGCTGAGGCCACACCCCCTTCCTTCACCCTGTTGAGCTACAGTGAACTGGTCTCTCGAGCTACGCCTCTTTCAGATGAAGACCCCGCCTACTGGGAGAGTTTTCAGAGCAAACAAGAAGCACCTGTCCGTCAGAGTGAAGCATAGTGAAACATGTGGGCCAACAAAGGACAGTGTTGCGACAGAGTCGTATTCAGTACTTTTGTGTTtacactggagctacaaggATAATGTggctaacaagtaatggaagcatatatcccaccaattagcattgtgctaactgCGTGCCTAAACACACATCTGCATCATCAAAACCACAATTTCCTtcttgtaattgtaattttcctttccaccttaaatgttgcagcAATTACACATTACTAATGTTCCTCTAACTGAgatgctgcaccatttaaggtggaaaggaaatttaaaaaacacatttttacgtttaatattgtaaatactgaaaataaaattaagtgaATTGGAAATACAGAGCTGAGAGGATGTGTATTTTCAGAACTCTCTTCTGAAAGtggggtctctctctcttttttctatctctatctctctctccatgtgtTTCTCCTCCATCTGCTGCAGTATCTATTTATATCGATGTTTCGCGGCCCATTAGGGCTGTAGGTTTGGATGGCATTGCTTTTAACCTCTTTCTcgcgctccctctctctgtctattttatgctctttctctctttctatccccctctcttctctctctgtacatacagtatatatctgAAAGTTGATAGTGAGATTAAAGCTGTACAGTGTTGTGTTAATAAACAAGTGTGTGAGCCA

Function

GO:

id name namespace
GO:0009059 macromolecule biosynthetic process biological_process
GO:0008897 holo-[acyl-carrier-protein] synthase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K06133 LYS5, acpT; 4'-phosphopantetheinyl transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7342 lncRNA upstream 10009 22481707 ~ 22496902 (+) True LOC103043812
TU7351 lncRNA upstream 10009 22481707 ~ 22496902 (+) False LOC103043812
TU7346 lncRNA upstream 68893 22434783 ~ 22438018 (+) False LOC103043812
TU7321 lncRNA upstream 161129 22344076 ~ 22345782 (+) True G5455
TU7267 lncRNA upstream 291860 22214411 ~ 22215051 (+) True G5416
TU7339 lncRNA downstream 6149 22521606 ~ 22524746 (+) False LOC103043812
TU7548 lncRNA downstream 191656 22707113 ~ 22707769 (+) True G5595
TU7581 lncRNA downstream 307414 22822871 ~ 22824066 (+) True G5619
TU7587 lncRNA downstream 387309 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA downstream 387309 22902766 ~ 22917835 (+) False G5620
XM_007248590.3 mRNA upstream 10031 22407558 ~ 22496880 (+) False LOC103043812
XM_007248591.3 mRNA upstream 10031 22407558 ~ 22496880 (+) False LOC103043812
XM_007248593.3 mRNA upstream 11316 22407556 ~ 22495595 (+) False LOC103043812
XM_022669755.1 mRNA upstream 11316 22407556 ~ 22495595 (+) False LOC103043812
XM_007248596.3 mRNA upstream 53635 22407575 ~ 22453276 (+) False LOC103043812
XM_007243028.3 mRNA downstream 71733 22587190 ~ 22594557 (+) True LOC103031483
XM_007248584.3 mRNA downstream 79544 22595001 ~ 22604561 (+) True lamtor1
XM_022669802.1 mRNA downstream 92366 22607823 ~ 22628028 (+) True numa1
XM_022669805.1 mRNA downstream 92366 22607823 ~ 22626804 (+) False numa1
XM_007248583.3 mRNA downstream 113604 22629061 ~ 22641854 (+) True LOC103041960
TU6745 other upstream 1507711 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 1955302 20549217 ~ 20551609 (+) False LOC107197594
TU6404 other upstream 3341280 19160731 ~ 19165631 (+) True G4775
TU6210 other upstream 3747053 18759375 ~ 18759858 (+) False G4612
trnag-ucc_4 other downstream 74003 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 75044 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 75962 22591419 ~ 22591490 (+) True trnag-ucc_6
XR_002649972.1 other downstream 127153 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other downstream 127153 22642610 ~ 22664836 (+) False LOC103041654

Expression Profile