RNA id: XM_007248649.3


Basic Information

Item Value
RNA id XM_007248649.3
length 3741
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC103034256
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23564348 ~ 23580240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGGCAGCTGTTTGACGGTTGGACCGAATGAAGCCCTGGTTGTATCAGGTGGCTGTACTGGGTCAGATGAGAAGATCTACGTGGTGGGCGGCTGGGCCTGGGCGTGGTGGTGcctgacagacacacaaagAATTACACTTGAGATTATGACTCTACAACCCAAATGTGAAAGTGTGGAAACGGCTGAAGGAGTGGCCATTACAGTCACAGGGGTCGCTCAGGTGAAGGTTATGACTGACAAGGACCTGCTGGCGATCGCTTGTGAGCAGTTTTTGGGTAAATCTGTTATGGAAATCAAAGGTGTGGTGCTGCAAACCTTGGAAGGCCATTTGCGCTCCATTTTAGGTACTCTGACAGTGGAGCAGATCTACCAGGACCGGGATAAGTTTGCCCAGTTGGTGCGTGAGGTGGCCGCCCCCGACGTCGGCCGCATGGGCATCGAAATCCTCAGCTTCACTATTAAAGATGTTTATGATAAGCTGGACTATCTGAGCTCTCTGGGGAAGACGCAGACGGCCGCGGTGCAGAGGGACGCAGACATCGGCGTGGCCGAGGCAGAACGGGATGCTGGGATAAAAGAAGCGGAGTGCAAGAAGGAAATGATGGATGTCACGTTCTTGGCTGACACCAAAATGGCCAACTCTAAACGGGAGCTGGATCTCCAGAAAGCTGCCTTCAACCAGGAAGTCAACAGCAAGAAAGCGGAGGCTCAGCTGGCGTACGAGCTACAAGCAGCTAAGGAGCTGCAGAAGATCCGTCTGGAGGAGATTGAGATTGAAGTGGTGCAGAGGAAGAAGCAAATCGTCATCGAGGATAAGGAAATCAATAGGACGGAGAAGGAGCTGATCGCTATAGTCAAGCGGCCCGCCGAGGCCGAGGCGTACAAGATGCTGCAGCTGGCTGAGGGCCAGAAGATAAAGAAGGTGCTGACTGCACAGGCTGAAGCGGAGAAGATCCGGAAGATCGGCGAGGCGGAGGCTAAGTCTATTGAGGCGGTGGGCAAGGCCGAGGCAGAGAAGATGAGGCTGAAGGCCGATGCCTACCAGCAGTATGGAGAGGCTGCCAAGACTGCGCTGGTACTGGAAGCGCTGCCAAAGATTGCTGCAAAGGTGTCTGCTCCTCTGGCCAGGACCAATGAGATTGTGATTCTGAGTGGAGAGGGTAGCCGAGTGACGGGTGAGGTGAACCGTCTGCTGGCTGAATTACCGGTGTCTGTCAACGCTCTCACAGGCGTGGATCTCACAAAGATCCCTCTGCTACAGAAGATGACCAACGCGGAAGCTTGAGACAAATCAGTTCCTGTCCTCGTCGGTACGGTTTATGGGTTTATGCACTCACTAAGAATGCCTTCAGAACACttgaagttatttaaaaaaagtaaaagaaaacaaaactcttaagttaaaaagaaaacaagtggaTTTTTATACCTCTGGTGCCTTAATGTTTTATAGGACCAGAATATTTGCATGTACTGCTGCTCCTCTCCTCCTGTACTGTTcatgtttcagtttttctttggttgtttgtttgtatgtttggtGGATGAGTGAATGGGTGTGTGGGGATTATGATGTGTTTGGGAAACTACTGGCACTACACTACAGTCTGTGTAcaatactttactttatttctgttcttttgcacttttttggattgtgtttgtgttttataagCATGAGAATTTATCCTCATATTGTTGAAGTCATATATATGTTACGATTGATTATGTCTACTGGTATATACATtcatctctttaaaaaaaaaagtgtcagatTGGAATACTGTTTTTAAGGAGGATAAAGGTTGCCAGGAACAATaagtgatttaaaaatgtatctgtAAAGCATCTGTGTGCTCCTCCGAAAAAATCTTCAGGAACTGCGAGACATCTGGTATGTTGCTTTACAAATGATTTCTGAACGCTAAGGCTAAGGGCGTTTTGacaccagcactatttattCGGTTAAATCAGACTCCGGTTGGTTTGTACTCTTGATGTGGTTCATTTCAGCAGGTGTGAAATCGATCAGTAATCGCACTTCTTCTGGAAGTGGTCTCAGTCTGGTACCAATCTCACTTCTTTTTTAGCGAGAATGTGATCCTCTGTTAAGTACACTATTttaatttgagctaaactgctgttcagtTGCAGTTTACCCTGATTTACTACCACAGCTATAAACAAATGCTGCCTCTGCCGCAGCTTCATGTTAAACTGTTTTCACACTGATTGCCTCTGCAGCTGCTTGACTTTGTTTAatatcaactgatccagaccagagaaacagactataggtgtgaaaatgcccttagaGAATCTTTCAGAACCAAGACCTCCAGGGAAAGCCTTGTGGTGCTCTTCACCCTTCGCTTCTGTATGGGTCAGAAGCCTGGACCACATACAGTAGGCACCTAAAAGCACTAGAGGCATATAATCAATGATgcctaaaatatgtaaaatattaagGATTAGCTGGGAGGAGCAATGCACTAATACCAGCGTCTTGGAGGACAGAGATATTTCTATCATCACTGCCACATTTTGCCCAAACCCTACTGGATCACCTTGGATGTTTTACGTCTTCCTAAAGTCCCATAAGTCCTGGAGGCCAAAAGCAGAAACTACAAGGAGaaatttggtgtaaaatgaaTCTGGTGGCAACCCTTTGTCGAATTATCCACCTCTGTTTTTCCCtagcattcccaaatacagcgcttttagctgatgctcccaactaACAGGcctacaatgctagtgataggggcatagcattacccatgcaaagaaatcactgttttcacaccATTAACAAAGTTATCAAAGTAGCACTGACGTCAAGTCACGCTAATTCGAGAGACGAACCCAAACAAAAAGGTAGAATAggttgcaaaataaaataaaattatttctgtGGAAGTGCATGATATTAGCAACCTCTGGAATTCATTCACTTCAAGGTATTGTGTGCATAAACAGTcctttttaataaactgttgTTGCCGTCCATTAATTCCAAATATTAATCCATCCACCACCAATACATTCCCTTTTCCATACTGCAcaggaatataataatatacaagaATCGGTCCAGAACCTGAATCTGATACaaccaacagaaaaaaaaacacaaggacCAAGAAGGAGGACAGTCATACATGCATGACTATAAGACTATAAGAGTTAGATCATATCAttccacatttttattttcctggtaacttttattcATCTATCAATctgacactgttttttttatgagcgTATAACACTACATTCActttattatttcttaaaaCTGTGAGTTAGCTTTACGTTACGTTACGAATGCTACATTTACTACTACACACGTTTGGTGAACGTCTGCTGCCGACGTTGTAAACGAATAGCGCTTACAACTCTCACCATTCTTCAGGAAATATGGAAATTGCCATCAGCATTGAAGGAGCTTTATTAGCGTGTAGCATTTGAGGGCAGTGAATTCTCTGGTGATAGCATTGCCGCCTTACGGGTAATTTCCATCATCCTCTTAGATCAGCCACGTTTACGCTACTTTTATGTGCTGCATGATTGCTTTTGGctagataaacagataaacagacttTTCAAAAACAAGGTCAGATGTCCCTgcatgaaatgtttttttatttattttttctctcataATTTATGCTCATTGATTCATGTCTTAACacttattaatattgtttttacatGAATAGATTTAATTATGTGA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07192 FLOT; flotillin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7884 lncRNA upstream 148761 23410459 ~ 23415587 (+) True G5827
TU7851 lncRNA upstream 210194 23352737 ~ 23354154 (+) True G5804
TU7840 lncRNA upstream 213042 23350718 ~ 23351306 (+) False G5797
TU7845 lncRNA upstream 224574 23335116 ~ 23339774 (+) True G5801
TU7928 lncRNA downstream 2129 23582369 ~ 23637196 (+) True G5845
TU7946 lncRNA downstream 166719 23746959 ~ 23773367 (+) True G5858
TU7949 lncRNA downstream 203854 23784094 ~ 23824071 (+) True G5861
XR_002650056.1 lncRNA downstream 246970 23827210 ~ 23828483 (+) True LOC103043618
TU7966 lncRNA downstream 259753 23839993 ~ 23847367 (+) True LOC103035426
XM_007248646.3 mRNA upstream 20127 23531850 ~ 23544221 (+) True LOC103033181
XM_007248642.3 mRNA upstream 142857 23417139 ~ 23421491 (+) True mrm3
XM_015605646.2 mRNA upstream 362331 23191090 ~ 23202017 (+) True dusp14
XM_007248617.3 mRNA upstream 362331 23192689 ~ 23202017 (+) False dusp14
XM_022669983.1 mRNA upstream 386789 23158514 ~ 23177559 (+) True tada2a
XM_007248648.3 mRNA downstream 20178 23600418 ~ 23620855 (+) True LOC103033930
XM_022670335.1 mRNA downstream 262161 23842401 ~ 23845680 (+) False LOC103035426
XM_007248653.3 mRNA downstream 262678 23842918 ~ 23845680 (+) False LOC103035426
XM_022670357.1 mRNA downstream 279805 23860045 ~ 23875492 (+) True gdpd1
XM_022670399.1 mRNA downstream 297881 23878121 ~ 23904715 (+) False LOC103022942
TU7839 other upstream 213042 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 213302 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 599424 22964060 ~ 22964924 (+) True G5646
TU7588 other upstream 641267 22911023 ~ 22923081 (+) False G5620
TU7589 other upstream 641267 22911023 ~ 22923081 (+) False G5620
TU7964 other downstream 251996 23832236 ~ 23833830 (+) True G5871
TU7890 other downstream 297912 23878152 ~ 23907474 (+) True LOC103022942
XR_002650083.1 other downstream 1831954 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 2459916 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 2459916 26040156 ~ 26046246 (+) False G6576

Expression Profile