RNA id: XM_022686557.1


Basic Information

Item Value
RNA id XM_022686557.1
length 1364
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC103023132
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13003537 ~ 13028805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAAACAGCTGCAGGGTCCTGGGGCAGAGCAGGGGGACAGAGATAGGCTCAGGAGAGGGCTCACCCTCAGGCAGCTAGCAGGATGGCCAGTAAAGttaTGGACCTGATCTACTGGAAGGACATGGAGCGGACGGGCATGGTCTTCACCGGGTTGGTGGTGGGCCTGCTCTCCCTCTTCCAGCTCAGCATCATCACAGTGGTCTCCACTCTTTCACTGGCCATCATGTGCTTCACCATCTCTGTGCGAATCTACTGCAAACTGCTGCACTCCCTGCAGCTCAGAGATGGTGCACATCCCTTCAAGTCATACCTGGAAATGGACATTGGCCTGGTTGGTGAACAAGCTGACCAGTACATGCAGAGGGGAATCGTCCTGATCTACTCTGCTCTGGACACACTGAAGCGCCTGGTTTTTGTTGGAAGCCTGTTTGACTCTCTCAAGTTTCTGCTGCTGGTGTACTTGGTGACGTATCTGGGAGCCCTGTGCAATGGCCTTACTCTGCTAATCATTGGTGTGATTGCAGtcttctctgtccctctcttctACACTCGACACCAGGAAAAAGTGGACACCATCTTGGCAACAGTACAAGCCCATGTTGATAACATTAAGGACATTCTGAGTCGACTGGTCCAGGGTGGTGGTCCTCCTCCTGACCCCACCCCAGGTGGAGCCAAACCCAAAAGTCAATGAGGTGGAGTCACAGAGAAGCAGAGAAGTCATCAGAGGAAGAAGGAGGAGCTATAGGCTGTCACTCAGATGTCTTAATCAACTGTTTGGAGCACCACTTTCAGAATAATACAGGATGAATGAGATACTTGGCACGAGAATAAGGATCTATAAATGATGCACAGAAACCACCGTGGAGGTGCAGTTTGATTTTAATGTGTGGTCTTTGGTAATGTGTGGCTCTTGGGTGATCAGTGGAATCCTGAACGTCTGTCTGGAAAGAATTGGATGGAAACTGACGATGTCTTTGAACCATCAAGCCTTGAACATGCAGACTGGAGCAccagaaccttttttttaaacacgaATGACTGAAGTCTGCACTAAAGATGAGCCAAAACCATGTAGCGCAGGACCAGTTTACCAGGTCATCCCAGGTcatctttcacttttaacagttttaaagagaatggcgtgtgtgtatgtgtgcagttTTGGACATGCAGCTGAATTCCTGTTAACACATGTGAGAGATATTAAAACTACAatgccattttattttattcatcatttTCATTGTTTCCCATTGTCTATTTAAATCCGTTCTTTTAACAAGACCCCTTTAAAACAAAGCTTATTTACATATAGTTTTGAAGTCATATGGCATCCACCaataaaaagtgtaattaacaag

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4352 lncRNA upstream 15159 12999045 ~ 12999446 (+) True G3323
XR_002652336.1 lncRNA upstream 22482 12989585 ~ 12992123 (+) True LOC111197033
XR_002652330.1 lncRNA upstream 22482 12990819 ~ 12992123 (+) False LOC111197033
TU4240 lncRNA upstream 293765 12714618 ~ 12720840 (+) True G3232
TU4203 lncRNA upstream 356298 12577080 ~ 12658307 (+) True G3205
TU4378 lncRNA downstream 46792 13075597 ~ 13162587 (+) True G3342
TU4377 lncRNA downstream 124215 13153020 ~ 13205546 (+) False G3342
TU4436 lncRNA downstream 434290 13463095 ~ 13464950 (+) True G3377
XR_002648489.1 lncRNA downstream 438868 13467673 ~ 13492977 (+) True LOC111188402
TU4446 lncRNA downstream 453244 13482049 ~ 13485913 (+) True G3381
XM_007234508.3 mRNA upstream 221302 12788901 ~ 12793303 (+) True trappc4
XM_007234505.3 mRNA upstream 260705 12708209 ~ 12753900 (+) True sacs
XM_007234506.3 mRNA upstream 260705 12708209 ~ 12753900 (+) False sacs
XM_007234504.2 mRNA upstream 345836 12641165 ~ 12668769 (+) True mipep
XM_007234499.3 mRNA upstream 376346 12623464 ~ 12638259 (+) True LOC103047626
XM_007260902.3 mRNA downstream 5675 13034480 ~ 13042611 (+) True LOC103023447
XM_007260900.3 mRNA downstream 95977 13124782 ~ 13150184 (+) True LOC103022831
XM_007260897.3 mRNA downstream 157316 13186121 ~ 13330297 (+) True arhgap35
XM_022686943.1 mRNA downstream 157316 13186121 ~ 13330297 (+) False arhgap35
XM_007260896.3 mRNA downstream 355172 13383977 ~ 13455473 (+) True npas1
TU4335 other upstream 30336 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 1087355 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 1725759 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 1735446 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 3272140 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 1932368 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 2009750 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 2017508 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 2044035 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 3514137 16542942 ~ 16545854 (+) True G4221

Expression Profile